Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3257g00002 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCCTCCTGCTCCAGCAACAATAATAACAGCGATGCCGGCAATTTTGAATGCAACATATGCTTTGACTTAGCACAAGATCCTATAATCACTTTATGCGGTCATCTTTTCTGCTGGCCTTGTCTTTATAAATGGCTTCACTTCCACTCACAGTCACGGGAATGCCCTGTGTGTAAGGCCCTTATTGAGGAGGATAAGTTGGTTCCCTTGTATGGGAGAGGAAAGACATCAACTGACCCTAGATCAAAATCTATTCCTGGTGTTAATATCCCACATCGTCCTGCTGGTCAGAGACCTGAAACTGCTCCTCCACCTGAATCAAATCCTTTTCCTCAACATGGTTTTGGATTCACAGGTGGGTTGGGAGGGTTTGCACCCGCAGCCCCCGGAAGATTTGGGAATTTCACATTGTCTGCTGCATTTGGTGGTTTTATACCATCCTTATTTAACTTCCAGTTGCATGGATTTCATGATGCAAGCATGTATGGTGGAGCAGCTGGTTTCCCTTATGGGTTTTCTAATTCTTTTCATGGTGGCCATGTTCATAGATATCCTCTGCACACAGGTCAAGGGCAACAAGACTATTTTCTGAAGAGGCTGCTGCTGTTTGTTATTTTTTGTGTTGTTCTTGCTTTATTTTGGCAATAG 690 0.4478 MASGFGESTSRSPPSPSCSSNNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALIEEDKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFPQHGFGFTGGLGGFAPAAPGRFGNFTLSAAFGGFIPSLFNFQLHGFHDASMYGGAAGFPYGFSNSFHGGHVHRYPLHTGQGQQDYFLKRLLLFVIFCVVLALFWQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3257g00002 229 SMART ring_2 32 72 IPR001841 -
Gabi3257g00002 229 SUPERFAMILY RING/U-box 29 85 - -
Gabi3257g00002 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi3257g00002 229 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3257g00002 229 CDD RING-HC_AtRMA-like 30 74 - -
Gabi3257g00002 229 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Gabi3257g00002 229 MobiDBLite consensus disorder prediction 86 123 - -
Gabi3257g00002 229 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 - -
Gabi3257g00002 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Gabi3257g00002 229 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Gabi3257g00002 229 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3257g00002 Gabi-Chr3257 24647 26304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3257g00002 16 212 C3H Transcription Factor Family AT1G19310 68.421 1.82e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3257g00002 K10666 - qsa:O6P43_018852 383.645