Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi324g00012 ATGACAACTGGAAAGGGCAAGGGACCAGTGAGGAAATCAAAGGAAGTATTGAAGCCAGTTGATGACCGAAAGGTAGGGAAGCGAAAGGCTGCTTATAAGCCTGACATCAGTAGTGCAAAGTCAAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCACCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAAAGACTTTTAAGGAACAAAATCCTAATGTGAAGGCTGTATCAGCTGTTGGGAAGGCTGGAGGAGCAAAATGGAAATCCCTGACTGAGGCTGAGAAAGCTCCATACGAAGCCAAGGCTGCAAAAAGGAAAGTTGAGTATGAAAAACTAATGAATGCTTATAATAGAAAGCAGGCAAGTTCGGCAGTTGATGGAGATGCGGAATCAGAAGTGAATGATGAAGAGGATGAAGCCAGTGGAGAGGAAGGCCACCAAGTGGAGGATGAGGAGGACGAGGACGAGGGGGATGAAGAGGATGAGGAAGATGATGAATGA 510 0.4569 MTTGKGKGPVRKSKEVLKPVDDRKVGKRKAAYKPDISSAKSKKAKKDPNKPKRPPSAFFVFLEEFRKTFKEQNPNVKAVSAVGKAGGAKWKSLTEAEKAPYEAKAAKRKVEYEKLMNAYNRKQASSAVDGDAESEVNDEEDEASGEEGHQVEDEEDEDEGDEEDEEDDE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi324g00012 169 MobiDBLite consensus disorder prediction 118 169 - -
Gabi324g00012 169 CDD HMG-box_AtHMGB1-like 52 112 - -
Gabi324g00012 169 MobiDBLite consensus disorder prediction 132 169 - -
Gabi324g00012 169 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 13 163 IPR031061 -
Gabi324g00012 169 SMART hmgende2 50 121 IPR009071 -
Gabi324g00012 169 MobiDBLite consensus disorder prediction 8 44 - -
Gabi324g00012 169 SUPERFAMILY HMG-box 36 120 IPR036910 -
Gabi324g00012 169 MobiDBLite consensus disorder prediction 1 55 - -
Gabi324g00012 169 Gene3D High mobility group box domain 35 134 IPR036910 -
Gabi324g00012 169 Pfam HMG (high mobility group) box 51 120 IPR009071 -
Gabi324g00012 169 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 51 120 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi324g00012 Gabi-Chr324 82298 85181 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gabi324g00012 HMG_box 7.1e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi324g00012 K25507 - mof:131167286 197.978