Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi324g00008 | ATGCGCAAGTCTTTCAAAGATTCCCTGAAAGCTCTTGAAGCTGACATCCAGTTTGCCAATACACTAGCTTCTGATTATCCAAGTGATCGCGATGGTGCGTGCCTCCAAATGAGACTGTCCTACAGCCCAGCTGCTCAGTTCTTCCTTTTTCTGGTTCAGTGGACTGACTGTCACCTTGCTGGAGCTTTGGGATTGCTTAGAATTCTGATATATAAGGCATATAAGGATGGCAAGACAACCATGTTCATTTATGAAAGAAAAGCCAGTCTGAAGGAGTTCTATGGAATCACTGATGTTGAAGACAGGAAACAGAAACATCTATGTGCTACTAGGTACAAGCCTAAAGATTTGATAAGCAAAGGAAAACTCTCTGAAATTGACATGGAGAGAGAAGAAGAGTGTGGCATTTGCATGGAGATGAACAGCAAGGTTGTATTGCCCAACTGCAATCATTCACTGTGTATGACATGCTACCGAGACTGGCATGCAAGATCTCAAAGTTGCCCTTTCTGCCGGGACAGTCTCAAAAGAGTAGACTCTGGTGACCTTTGGATCTACATGAGCAGCAATGAGATAGATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGACTATTTATGTACATAGAAAAGTTGCCTCTCATTGCCAGACCCTATATTCATGTCATATCCTCACCACTGGTGATTGCCCATTAG | 699 | 0.4278 | MRKSFKDSLKALEADIQFANTLASDYPSDRDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYKDGKTTMFIYERKASLKEFYGITDVEDRKQKHLCATRYKPKDLISKGKLSEIDMEREEECGICMEMNSKVVLPNCNHSLCMTCYRDWHARSQSCPFCRDSLKRVDSGDLWIYMSSNEIDDLASINKENLKRLFMYIEKLPLIARPYIHVISSPLVIAH | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi324g00008 | 232 | SMART | ring_2 | 134 | 171 | IPR001841 | - | |
| Gabi324g00008 | 232 | PANTHER | RING FINGER PROTEIN 41, 151 | 3 | 216 | - | - | |
| Gabi324g00008 | 232 | ProSitePatterns | Zinc finger RING-type signature. | 149 | 158 | IPR017907 | - | |
| Gabi324g00008 | 232 | SUPERFAMILY | RING/U-box | 122 | 177 | - | - | |
| Gabi324g00008 | 232 | FunFam | RING/U-box superfamily protein | 115 | 181 | - | - | |
| Gabi324g00008 | 232 | Pfam | Zinc finger, C3HC4 type (RING finger) | 131 | 177 | - | - | |
| Gabi324g00008 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 134 | 172 | IPR001841 | - | |
| Gabi324g00008 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 180 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi324g00008 | Gabi-Chr324 | 73469 | 76472 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi324g00008 | 94 | 179 | C3H Transcription Factor Family | AT5G01960 | 25.000 | 2.79e-06 | 45.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi324g00008 | K25840 | - | gmx:100814293 | 392.119 |