Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi324g00007 ATGCGCAAGTCTTTCAAAGATTCCCTGAAAGCTCTTGAAGCTGACATCCAGTTTGCCAATACACTAGCTTCTGATTATCCAAGTGATCGCGATGGTGCGTGCCTCCAAATGAGACTGTCCTACAGCCCAGCTGCTCAGTTCTTCCTTTTTCTGGTTCAGTGGACTGACTGTCACCTTGCTGGAGCTTTGGGATTGCTTAGAATTCTGATATATAAGGCATATAAGGATGGCAAGACAACCATGTTCATTTATGAAAGAAAAGCCAGTCTGAAGGAGTTCTATGGTGTGGTCTTTCCCTCTTTACTGCAACTTCACAGAGGAATCACTGATGTTGAAGACAGGAAACAGAAACATCTATGTGCTACTAGGTACAAGCCTAAAGATTTGATAAGCAAAGGAAAACTCTCTGAAATTGACATGGAGAGAGAAGAAGAGTGTGGCATTTGCATGGAGATGAACAGCAAGGTTGTATTGCCCAACTGCAATCATTCACTGTGTATGACATGCTACCGAGACTGGCATGCAAGATCTCAAAGTTGCCCTTTCTGCCGGGACAGTCTCAAAAGAGTAGACTCTGGTGACCTTTGGATCTACATGAGCAGCAATGAGATAGATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGACTATTTATGTACATAGAAAAGTTGCCTCTCATTGCCAGACCCTATATTCATGTCATATCCTCACCACTGGTGATTGCCCATTAG 735 0.4299 MRKSFKDSLKALEADIQFANTLASDYPSDRDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYKDGKTTMFIYERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLCATRYKPKDLISKGKLSEIDMEREEECGICMEMNSKVVLPNCNHSLCMTCYRDWHARSQSCPFCRDSLKRVDSGDLWIYMSSNEIDDLASINKENLKRLFMYIEKLPLIARPYIHVISSPLVIAH 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi324g00007 244 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Gabi324g00007 244 SMART ring_2 146 183 IPR001841 -
Gabi324g00007 244 FunFam RING/U-box superfamily protein 127 193 - -
Gabi324g00007 244 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Gabi324g00007 244 SUPERFAMILY RING/U-box 134 189 - -
Gabi324g00007 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 192 IPR013083 -
Gabi324g00007 244 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Gabi324g00007 244 PANTHER RING FINGER PROTEIN 41, 151 3 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi324g00007 Gabi-Chr324 73280 76472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi324g00007 90 191 C3H Transcription Factor Family AT5G01960 28.037 1.35e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi324g00007 K25840 - gmx:100814293 424.476