Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi324g00004 ATGGAAGGTGCAGCAGAGGTTGCAAATGGAAACGGCTCATTGAACTTGAAGCCAAGTGATACCAAGGGAAAGATCATTACTTGCAAAGCTGCTGTGGCATATGGTCCGGGAGAACCCTTCGTGGTGGAACAAGTTCTTGTTCATCCACCTCAGAAAATGGAGGTTCGAATCAAGATTCTCTATACTTCTATTTGTCACACCGATCTCAGTGCTTGGCGAGGCGAGAATGAGTCTCAACGTGCTTTTCCACGAATTTTTGGCCATGAAGCTTCCGGGGTTGTGGAGAGCGTTGGGGAAGGTGTGAATGACATGGAAGAAGGGGTCATGGTGGTGCTAATATTCAATGGTGAATGCGGTGAGTGTAGCTATTGCAAGTGCGAGTTAACAAACATGTGTGAGAGGTTTGGTGTGAACCCAATGAAGAAAGTTATGGATGGTGATGGCACAAGCAGATTCTCAACCATTAACGGCAAACCCATCTTCCATTTCTTGAACACCTCAACCTTCACGGAGTACACGGTGGTTGACTCAGCATGCGTTGTTAAGCTCCACCGTGACCTCACCCTCAGCCTCAAAAACCTCACCTTGCTCAGTTGCGGTGTATCCACAGGAGTTGGAGCTGCTTGGAATACTGCTAATGTACATTCAGGTTCATCTGTGGCAGTCTTTGGTTTAGGTGCTGTTGGTCTCGCTGTTGCAGAAGGGGCACGAGCCAGAGGTGCATCCAAAATAATAGGTGTGGACATCAACAAAGACAAACTTATTAAAGCCCAAGCAATGGGAATCACAGACTTCATAAATCCAAGGGATGAAGAGAAGCCCGTATATGAGAGAATCAGAGAAATGACTGGAGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACTTGGATGTTCTAAGGGATGCCTTCTTGTCTGCTCATGCGGGTTGGGGATTGACTGTAGTATTGGGAATTCATGGAACACCAAAGATGCTTCCCATCCACCCAATGGAACTCTTCGATGGTCGCAGAATTGTAGGATCAGTTTTTGGAGGTTTCAAAGGGAAAAGTCAGTTACCTCATTTTGCCAGAGAATGCATACAAGGAGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTTCCCTTCGAGGAGATAAACAAAGCCTTCGATCTTTTGGTCAGTGGGAAGTCACTGAGATGTCTTCTGCACCTCTAA 1200 0.4625 MEGAAEVANGNGSLNLKPSDTKGKIITCKAAVAYGPGEPFVVEQVLVHPPQKMEVRIKILYTSICHTDLSAWRGENESQRAFPRIFGHEASGVVESVGEGVNDMEEGVMVVLIFNGECGECSYCKCELTNMCERFGVNPMKKVMDGDGTSRFSTINGKPIFHFLNTSTFTEYTVVDSACVVKLHRDLTLSLKNLTLLSCGVSTGVGAAWNTANVHSGSSVAVFGLGAVGLAVAEGARARGASKIIGVDINKDKLIKAQAMGITDFINPRDEEKPVYERIREMTGGGVHYSFECTGNLDVLRDAFLSAHAGWGLTVVLGIHGTPKMLPIHPMELFDGRRIVGSVFGGFKGKSQLPHFARECIQGVVKLDNFITHELPFEEINKAFDLLVSGKSLRCLLHL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi324g00004 399 Gene3D - 204 342 - -
Gabi324g00004 399 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 87 101 IPR002328 GO:0008270|GO:0016491
Gabi324g00004 399 Pfam Zinc-binding dehydrogenase 227 346 IPR013149 -
Gabi324g00004 399 FunFam S-(hydroxymethyl)glutathione dehydrogenase 204 342 - -
Gabi324g00004 399 Gene3D - 31 394 - -
Gabi324g00004 399 SUPERFAMILY GroES-like 349 398 IPR011032 -
Gabi324g00004 399 PANTHER ALCOHOL DEHYDROGENASE 23 396 - -
Gabi324g00004 399 FunFam Alcohol dehydrogenase 6 31 216 - -
Gabi324g00004 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 189 363 IPR036291 -
Gabi324g00004 399 Pfam Alcohol dehydrogenase GroES-like domain 54 182 IPR013154 -
Gabi324g00004 399 SUPERFAMILY GroES-like 21 223 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi324g00004 Gabi-Chr324 26714 32497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi324g00004 54 388 Monolignol Biosynthesis Gene Families AT2G21890 25.852 1.93e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi324g00004 K00001 - gmx:100819896 640.958