Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi324g00003 ATGGAAGGTGCAGCAGAGGTTGCAAATGGAAACGGCTCATTGAACTTGAAGCCAAGTGATACCAAGGGAAAGATCATTACTTGCAAAGCTGCTGTGGCATATGGTCCGGGAGAACCCTTCGTGGTGGAACAAGTTCTTGTTCATCCACCTCAGAAAATGGAGAATGAGTCTCAACGTGCTTTTCCACGAATTTTTGGCCATGAAGCTTCCGGGGTTGTGGAGAGCGTTGGGGAAGGTGTGAATGACATGGAAGAAGGGGTCATGGTGGTGCTAATATTCAATGGTGAATGCGGTGAGTGTAGCTATTGCAAGTGCGAGTTAACAAACATGTGTGAGAGGTTTGGTGTGAACCCAATGAAGAAAGTTATGGATGGTGATGGCACAAGCAGATTCTCAACCATTAACGGCAAACCCATCTTCCATTTCTTGAACACCTCAACCTTCACGGAGTACACGGTGGTTGACTCAGCATGCGTTGTTAAGCTCCACCGTGACCTCACCCTCAGCCTCAAAAACCTCACCTTGCTCAGTTGCGGTGTATCCACAGGAGTTGGAGCTGCTTGGAATACTGCTAATGTACATTCAGGTTCATCTGTGGCAGTCTTTGGTTTAGGTGCTGTTGGTCTCGCTGTTGCAGAAGGGGCACGAGCCAGAGGTGCATCCAAAATAATAGGTGTGGACATCAACAAAGACAAACTTATTAAAGCCCAAGCAATGGGAATCACAGACTTCATAAATCCAAGGGATGAAGAGAAGCCCGTATATGAGAGAATCAGAGAAATGACTGGAGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACTTGGATGTTCTAAGGGATGCCTTCTTGTCTGCTCATGCGGGTTGGGGATTGACTGTAGTATTGGGAATTCATGGAACACCAAAGATGCTTCCCATCCACCCAATGGAACTCTTCGATGGTCGCAGAATTGTAGGATCAGTTTTTGGAGGTTTCAAAGGGAAAAGTCAGTTACCTCATTTTGCCAGAGAATGCATACAAGGAGTGGTGAAGCTGGATAATTTCATCACTCACGAGCTTCCCTTCGAGGAGATAAACAAAGCCTTCGATCTTTTGGTCAGTGGGAAGTCACTGAGATGTCTTCTGCACCTCTAA 1137 0.4626 MEGAAEVANGNGSLNLKPSDTKGKIITCKAAVAYGPGEPFVVEQVLVHPPQKMENESQRAFPRIFGHEASGVVESVGEGVNDMEEGVMVVLIFNGECGECSYCKCELTNMCERFGVNPMKKVMDGDGTSRFSTINGKPIFHFLNTSTFTEYTVVDSACVVKLHRDLTLSLKNLTLLSCGVSTGVGAAWNTANVHSGSSVAVFGLGAVGLAVAEGARARGASKIIGVDINKDKLIKAQAMGITDFINPRDEEKPVYERIREMTGGGVHYSFECTGNLDVLRDAFLSAHAGWGLTVVLGIHGTPKMLPIHPMELFDGRRIVGSVFGGFKGKSQLPHFARECIQGVVKLDNFITHELPFEEINKAFDLLVSGKSLRCLLHL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi324g00003 378 PANTHER ALCOHOL DEHYDROGENASE 23 375 - -
Gabi324g00003 378 FunFam S-(hydroxymethyl)glutathione dehydrogenase 183 321 - -
Gabi324g00003 378 SUPERFAMILY GroES-like 328 377 IPR011032 -
Gabi324g00003 378 Gene3D - 183 321 - -
Gabi324g00003 378 Pfam Alcohol dehydrogenase GroES-like domain 55 161 IPR013154 -
Gabi324g00003 378 SUPERFAMILY GroES-like 21 186 IPR011032 -
Gabi324g00003 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 342 IPR036291 -
Gabi324g00003 378 Gene3D - 57 374 - -
Gabi324g00003 378 Pfam Zinc-binding dehydrogenase 206 325 IPR013149 -
Gabi324g00003 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi324g00003 Gabi-Chr324 26711 32497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi324g00003 61 366 Monolignol Biosynthesis Gene Families AT2G21730 25.387 8.16e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi324g00003 K00001 - gmx:100819896 587.8