Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00067 ATGAGTGATAGGGTTTCTGGAAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGTTTCATAACCACCGACGATGGCGGCGAGGATCTCTTTGTGCATCAATCCTCCATCCGATCTGATGGCTTTCGCAGCCTCGGCGAAGGTGAGTCCGTCGAATTCGTTATCGAATCCGATCCCGATGGACGCACCAAGGCCGTCGATGTCACTGGCCCTGACGAATCATCTGTTCAGGGTAGCCGACGCGCCGCTCCTCCTGGCGGTGGAGGCAGGGGCTACGGCGGAGGACGCGGTGGCGGTGGTGGACGAGGTGGCGGAAGAGGTGGATATGGAGGCGGCGGCGGCGGCGGTGGAGGAGCGGCTTGCTACAACTGTGGTGAGTCGGGTCACATAGCTAGGGACTGTTACCAAGGAAGTGGCGGCGGTGGAGGCGGAGGTGGAAGATACGGAGGCGGTGGCGGAGGATACGGAGGAGGAGGAGGCGGCGGCGGAGGGAGCTGCTACAACTGTGGGGAGTCCGGGCATTTTGCTAGGGACTGCCCTTCCAATGCTCGTTAA 555 0.609 MSDRVSGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLGEGESVEFVIESDPDGRTKAVDVTGPDESSVQGSRRAAPPGGGGRGYGGGRGGGGGRGGGRGGYGGGGGGGGGAACYNCGESGHIARDCYQGSGGGGGGGGRYGGGGGGYGGGGGGGGGSCYNCGESGHFARDCPSNAR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00067 184 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Gabi3247g00067 184 Gene3D - 161 184 - -
Gabi3247g00067 184 Gene3D - 116 142 - -
Gabi3247g00067 184 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Gabi3247g00067 184 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Gabi3247g00067 184 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Gabi3247g00067 184 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 182 - -
Gabi3247g00067 184 MobiDBLite consensus disorder prediction 54 105 - -
Gabi3247g00067 184 ProSiteProfiles Zinc finger CCHC-type profile. 121 134 IPR001878 GO:0003676|GO:0008270
Gabi3247g00067 184 ProSiteProfiles Zinc finger CCHC-type profile. 166 181 IPR001878 GO:0003676|GO:0008270
Gabi3247g00067 184 SMART csp_8 6 71 IPR011129 GO:0003676
Gabi3247g00067 184 Pfam Zinc knuckle 120 134 IPR001878 GO:0003676|GO:0008270
Gabi3247g00067 184 Pfam Zinc knuckle 165 181 IPR001878 GO:0003676|GO:0008270
Gabi3247g00067 184 SUPERFAMILY Retrovirus zinc finger-like domains 149 182 IPR036875 GO:0003676|GO:0008270
Gabi3247g00067 184 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Gabi3247g00067 184 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Gabi3247g00067 184 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Gabi3247g00067 184 Gene3D - 1 83 IPR012340 -
Gabi3247g00067 184 SUPERFAMILY Retrovirus zinc finger-like domains 111 139 IPR036875 GO:0003676|GO:0008270
Gabi3247g00067 184 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Gabi3247g00067 184 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Gabi3247g00067 184 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3247g00067 Gabi-Chr3247 451707 452680 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gabi3247g00067 CSD 7.9e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3247g00067 - - gmx:100799708 192.971