Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00064 ATGAAAGAGAAGGAAGAGGATGAGATCGAAGAGTGGGAAATTGAGTATTGGCCACATAGATTCTCCTACGAGGAATTGAACATGGCCACTGGGAATTTCGGAAAAGAAAAGCTCCTAGGTTCAGGAGGGTTCGAAAGAGTGTATAAAGGGACACTCTCAAACAAGACGGAAATTGCGGTGAAATACGTCAACCACGATTCTAAACAAGGGTTAAGAGAATTCATGGCAGAGATTTCTAGCATGGGGAGGCTTCAGCACAAGAACTTGGTCCAACTGCGAGTTGGTGCAGAAAACGGAACGAATGGACCCCTATATGAGTCCACTGCGTACACTGAGTGCAAAGAGCACCCTGAGAAGCCACTCTACGGAGGAGGAGTTTTCAAGAGTGAGTCTCTGTCTCGAGATGGTTCGGAAGATAGCAGCATTGTCTCCGATATGCCCTCACTCGTTCTGAATAATCTCACTGACGGCACCATCTACACTTTTTCCATATGGGTGAGAGTCGAAAGTTCAAGTTCAGCTATGATAAGGGCAAGCTTGCAAACGGAAAAAGAAAAATATGAGTGCATTGGGACAGTTGCAGCCAAGCGTGGATGCTGGTCATTTCTGAAGGGTGGATTTGTTCTCAATTTGCCTTCAAATTTATCTATAATCTCCTTTGAGAACGGGGATGGTAAAGATATCAATATAGATATAGCTAGCCCATCACTGCAACCATTTACCAAGCAGCAATGGAGAACCAATCAACAGTATATAATTAATACGCAAAGAAAGCGTGCCGTCACTGTTCATGTGTCAGATACTAATGGAAGTAGATTGCAAGGAGCAGCAATCTGTATAGAGCAAATCTCAAAAGACTTCCCTATTGGATCTGCAATAGCAAAGACCATTCTTGGCAACTTGCCCTATCAGAATTGGTTTGTGAAGCGGTTCAATGCTGCAGTCTTTGAGAATGAGCTCAAGTGGTACGCCACAGAGCCTGATCAAGGCAAGGTCAATTACACCATTTCGGATCAGATGATGCAATTTGTTAGAGCAAACAAAATCATAGCTAGAGGGCACAATATATTCTGGGAAGACCCTAAATATACTCCGGCATGGGTTCTTAACCTTACTGGCATCCAGTTAAGATCTGCTGTTAATTCCCGAATACAAAGTCTCATGAGCCAATACAAAGAAGAATTCATACATTGGGATGTTAGCAATGAAATGCTTCATTTTGATTTCTATGAACAAAGGCTTGGACCTGATGCCACATTGCATTTCTTTGAGACAGCACATAAATCAGACCCATTAGCAACCCTGTTCATGAATGATTTTAATGTTGTGGAAACATGCAGTGATGTAAATTCCACTGTTGACGCCTACATCTCACGGATAAGAGAACTACAACAAAATGGTGTCTTTATGGATGGAATTGGCTTGGAGGGTCACTTCACAATACCAAATCCTCCCCTTATCAGAGCTATCCTAGACAAGTTGGCAACACTTGGCCTTCCCATTTGGCTTACTGAAGTTGACATAAGCAAAACACTTGATAAAGAAACTCAGGCAATTTATTTGGAAGAAGTGTTGAGGGAAAGCTTCTCACATCCTTCGGTGAATGGAATAATGCTTTGGACCGCATTCCATCCAAAAGGGTGCTACCAAATGTGCCTCACAGACAATGATTTCAAGAACCTCCCATCAGGTGATGTGGTGGACAAACTTCTTGAGGAGTGGCAAACTGGTCGTGTAGAGGGAGTGACTGATAATCACGGTTCTTATAGCTTTTATGGGTTCTTAGGAGAATACAGAATTAATGCCAAGTACGGCAACAGGACTACAAATTCAACCTTCTCTCTCTGTCGGGGTGAAGAAACTAGACATTTCACTATTACACTCTGA 1887 0.4266 MKEKEEDEIEEWEIEYWPHRFSYEELNMATGNFGKEKLLGSGGFERVYKGTLSNKTEIAVKYVNHDSKQGLREFMAEISSMGRLQHKNLVQLRVGAENGTNGPLYESTAYTECKEHPEKPLYGGGVFKSESLSRDGSEDSSIVSDMPSLVLNNLTDGTIYTFSIWVRVESSSSAMIRASLQTEKEKYECIGTVAAKRGCWSFLKGGFVLNLPSNLSIISFENGDGKDINIDIASPSLQPFTKQQWRTNQQYIINTQRKRAVTVHVSDTNGSRLQGAAICIEQISKDFPIGSAIAKTILGNLPYQNWFVKRFNAAVFENELKWYATEPDQGKVNYTISDQMMQFVRANKIIARGHNIFWEDPKYTPAWVLNLTGIQLRSAVNSRIQSLMSQYKEEFIHWDVSNEMLHFDFYEQRLGPDATLHFFETAHKSDPLATLFMNDFNVVETCSDVNSTVDAYISRIRELQQNGVFMDGIGLEGHFTIPNPPLIRAILDKLATLGLPIWLTEVDISKTLDKETQAIYLEEVLRESFSHPSVNGIMLWTAFHPKGCYQMCLTDNDFKNLPSGDVVDKLLEEWQTGRVEGVTDNHGSYSFYGFLGEYRINAKYGNRTTNSTFSLCRGEETRHFTITL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00064 628 Pfam Glycosyl hydrolase family 10 283 541 IPR001000 GO:0004553|GO:0005975
Gabi3247g00064 628 Pfam Protein tyrosine and serine/threonine kinase 36 93 IPR001245 GO:0004672|GO:0006468
Gabi3247g00064 628 PRINTS Glycosyl hydrolase family 10 signature 395 406 IPR001000 GO:0004553|GO:0005975
Gabi3247g00064 628 PRINTS Glycosyl hydrolase family 10 signature 351 363 IPR001000 GO:0004553|GO:0005975
Gabi3247g00064 628 PRINTS Glycosyl hydrolase family 10 signature 466 478 IPR001000 GO:0004553|GO:0005975
Gabi3247g00064 628 PRINTS Glycosyl hydrolase family 10 signature 433 444 IPR001000 GO:0004553|GO:0005975
Gabi3247g00064 628 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 274 570 IPR001000 GO:0004553|GO:0005975
Gabi3247g00064 628 SUPERFAMILY Galactose-binding domain-like 151 230 IPR008979 -
Gabi3247g00064 628 Gene3D - 131 234 - -
Gabi3247g00064 628 SUPERFAMILY Protein kinase-like (PK-like) 10 93 IPR011009 -
Gabi3247g00064 628 PANTHER GLYCOSYL HYDROLASE 147 617 IPR044846 GO:0004553|GO:0005975
Gabi3247g00064 628 SUPERFAMILY (Trans)glycosidases 273 578 IPR017853 -
Gabi3247g00064 628 Gene3D Glycosidases 277 584 - -
Gabi3247g00064 628 Gene3D Phosphorylase Kinase; domain 1 14 104 - -
Gabi3247g00064 628 SMART glyco_10 320 571 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3247g00064 Gabi-Chr3247 427941 433574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3247g00064 96 628 Glycoside Hydrolase AT4G38650 64.935 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi3247g00064 Glyco_hydro_10 1.8e-47 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3247g00064 - - gmx:100806005 933.324