Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00061 ATGCGTAGAGAGATCTCGTTCCTTGTTCAGCCGCGATGTCTGCTTCTCTTCGTTGTTCTCTCAATTTTCCTTATTCTCGCATTATCTGGCTCCAAACGGCCAGAGGAGAAAGAAGAACAGCCTGAAATTACACAGAGAGTATTCTTGGATGTTGATATTGACGGACACCGTTTAGGTAGGATCGTGACTGGATTATATGGCCAAGTTGTACCAAAAACTATGGAAAATTTTAGAGCATTATGCACAGGGGAGAAAGGAAAGAGTGCCTATGAAATAAAACTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTCGTGATTCAGGGTGGAGACATTGTTCATTACGTTGGAAGAGGATTTGAATCTGTTTATGGTGGCACCTTTCCTGACGAGAATTTCAAGATAAAACATTCACATGCTGGTGTGTTGTCTCTGGTGAATTCAGGTCCTGATTCCAATGGCTCACAGTTTTTTATCACCACAGTGAAGGCCAGCTGGTAA 510 0.4176 MRREISFLVQPRCLLLFVVLSIFLILALSGSKRPEEKEEQPEITQRVFLDVDIDGHRLGRIVTGLYGQVVPKTMENFRALCTGEKGKSAYEIKLHYKGTPFHRIISGFVIQGGDIVHYVGRGFESVYGGTFPDENFKIKHSHAGVLSLVNSGPDSNGSQFFITTVKASW 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00061 169 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 48 169 IPR002130 GO:0000413|GO:0003755
Gabi3247g00061 169 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 46 169 - -
Gabi3247g00061 169 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 39 169 - -
Gabi3247g00061 169 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 51 169 IPR002130 GO:0000413|GO:0003755
Gabi3247g00061 169 Gene3D - 33 169 IPR029000 -
Gabi3247g00061 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 65 80 IPR002130 GO:0000413|GO:0003755
Gabi3247g00061 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 101 113 IPR002130 GO:0000413|GO:0003755
Gabi3247g00061 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 159 IPR002130 GO:0000413|GO:0003755
Gabi3247g00061 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 159 169 IPR002130 GO:0000413|GO:0003755
Gabi3247g00061 169 SUPERFAMILY Cyclophilin-like 42 169 IPR029000 -
Gabi3247g00061 169 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 96 113 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3247g00061 Gabi-Chr3247 399525 408090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3247g00061 59 162 U-box Gene Family AT5G67530 44.762 2.04e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3247g00061 - - vra:106760817 286.96