Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00060 ATGCGTAGAGAGATCTCGTTCCTTGTTCAGCCGCGATGTCTGCTTCTCTTCGTTGTTCTCTCAATTTTCCTTATTCTCGCATTATCTGGCTCCAAACGGCCAGAGGAGAAAGAAGAACAGCCTGAAATTACACAGAGAGTATTCTTGGATGTTGATATTGACGGACACCGTTTAGGAGGAGGATGTAGGCAGTTAAGAGCAACAACTTATCATGTGCCGTATATTATAATTTCTGCAGGTAGGATCGTGACTGGATTATATGGCCAAGTTGTACCAAAAACTATGGAAAATTTTAGAGCATTATGCACAGGGGAGAAAGGAAAGAGTGCCTATGAAATAAAACTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTCGTGATTCAGGGTGGAGACATTGTTCATTACGTTGGAAGAGGATTTGAATCTGTTTATGGTGGCACCTTTCCTGACGAGAATTTCAAGATAAAACATTCACATGCTGGTGTGTTGTCTCTGGTGAATTCAGGTCCTGATTCCAATGGCTCACAGTTTTTTATCACCACAGTGAAGGCCAGCTGGTTGGATAGAGACCATGTTGCCTTCGGCAAGGTTGTTGAAGGCATGGATACTGTGTTTGCAATTGAAGGGGGTGCTGGAACCTACAGTGCGAAACCCAGAAAGAAGGTAGTGATTGCAGACTCTGGAGAGATACCCAAGAGCCAGTGGGATGAGGAAATATGA 732 0.4317 MRREISFLVQPRCLLLFVVLSIFLILALSGSKRPEEKEEQPEITQRVFLDVDIDGHRLGGGCRQLRATTYHVPYIIISAGRIVTGLYGQVVPKTMENFRALCTGEKGKSAYEIKLHYKGTPFHRIISGFVIQGGDIVHYVGRGFESVYGGTFPDENFKIKHSHAGVLSLVNSGPDSNGSQFFITTVKASWLDRDHVAFGKVVEGMDTVFAIEGGAGTYSAKPRKKVVIADSGEIPKSQWDEEI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00060 243 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 193 208 IPR002130 GO:0000413|GO:0003755
Gabi3247g00060 243 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 165 180 IPR002130 GO:0000413|GO:0003755
Gabi3247g00060 243 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 101 IPR002130 GO:0000413|GO:0003755
Gabi3247g00060 243 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Gabi3247g00060 243 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 192 IPR002130 GO:0000413|GO:0003755
Gabi3247g00060 243 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 46 234 - -
Gabi3247g00060 243 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 117 134 IPR020892 GO:0003755|GO:0006457
Gabi3247g00060 243 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 77 231 IPR002130 GO:0000413|GO:0003755
Gabi3247g00060 243 Gene3D - 33 240 IPR029000 -
Gabi3247g00060 243 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 79 233 IPR002130 GO:0000413|GO:0003755
Gabi3247g00060 243 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 68 234 - -
Gabi3247g00060 243 SUPERFAMILY Cyclophilin-like 70 234 IPR029000 -
Gabi3247g00060 243 Coils Coil 236 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3247g00060 Gabi-Chr3247 398688 408090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3247g00060 80 231 U-box Gene Family AT5G67530 39.869 7.18e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3247g00060 - - gmx:100808240 363.614