Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00056 ATGGGTAGGTCACCTTGCTGTGAGAAAGCTCATACAAATAAAGGTGCATGGACCAAAGAAGAAGATGATCGCCTTATAGCTTATATTCGAGCTCATGGTGAGGGATGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGTTGCGGCAAGAGTTGCCGTCTCCGTTGGATCAACTATCTCCGACCTGACCTCAAACGAGGCAATTTCACCGAAGAAGAAGATGAACTCATCATCAAACTCCATAGTCTCCTTGGTAACAAGTGGTCTCTAATAGCTGGAAGATTACCTGGAAGAACAGACAATGAGATAAAGAATTACTGGAATACTCATATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAAGTCACAGGCCTCTCAACGAGCCTTCTCACAATCATGTATCAGCTGTTGCTGTTGCTGCTGCTGCTGCTGCCACCACAATATCTTTTGCTACTAAACAAGAAGAAGACAATAATAGGGAGAATAATGAAGATTCCAAAGGACCCACCTTAGAACGTTGTCCTGACTTGAACCTTGAGTTAACAATTAGTCCTCCACATCAGCCTCAACCTGATCAACCATTCAACAAAATCATCATAGGGAGAAGCCTTTGCTTTGCTTGCAGTTTGGGTTTGCAGAATAGCAAAGATTGCAGCTGTGGGATTGATGGTAATATTGGCAACACGAGTACTGGGAGCACCACTGCTTCTGGTTATGATTTCTTGGGCTTGAAACCCAATGTTCTCGATTATAGAAGCTTGGAAATGAAATGA 783 0.4457 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPASHRPLNEPSHNHVSAVAVAAAAAATTISFATKQEEDNNRENNEDSKGPTLERCPDLNLELTISPPHQPQPDQPFNKIIIGRSLCFACSLGLQNSKDCSCGIDGNIGNTSTGSTTASGYDFLGLKPNVLDYRSLEMK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00056 260 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Gabi3247g00056 260 CDD SANT 69 112 IPR001005 -
Gabi3247g00056 260 SMART sant 66 114 IPR001005 -
Gabi3247g00056 260 SMART sant 13 63 IPR001005 -
Gabi3247g00056 260 CDD SANT 16 61 IPR001005 -
Gabi3247g00056 260 FunFam Myb transcription factor 68 137 - -
Gabi3247g00056 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3247g00056 260 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3247g00056 260 Gene3D - 68 139 - -
Gabi3247g00056 260 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3247g00056 260 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 167 - -
Gabi3247g00056 260 Gene3D - 14 66 - -
Gabi3247g00056 260 MobiDBLite consensus disorder prediction 153 175 - -
Gabi3247g00056 260 MobiDBLite consensus disorder prediction 157 174 - -
Gabi3247g00056 260 FunFam MYB-related transcription factor 13 66 - -
Gabi3247g00056 260 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi3247g00056 260 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3247g00056 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3247g00056 Gabi-Chr3247 358062 359485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3247g00056 1 260 MYB Transcription Factor Family AT4G38620 61.620 4.02e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3247g00056 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3247g00056 K09422 - oeu:111384643 384.03