Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00049 ATGGCAGTTAAGAGGAGATTTGTTTTGGTGGGGATTAGAATGGATAGCCATAGCAGACAGCTGCTCAATTGGGCTCTCGTCAAAGTCGCTGAACCTGGGGATTCTGTTATTGCAATCCATGTAGTTACAACTCCAGATTGTGTTTCCAAAAGCAAGCCCTTGGTTGATGGTTATTTAGAGGTTTATCAAGGGTTATGCGATGTGAATAAGGTAGGTCTCTCCGGTCAAATCTTGATAGGAAGTTCCATTCGAGACATTCTGGTCAGAGAGGCAAAAAACCGTGCTGCGCTGGCTCTAGTGGTGGGGGGTGGAGCTTCCACTGCTAAATATTGCGCCAAAAGATTACCACCCACCACCAATGTTCTAGCCATCCAAGGTGCAAGAATTGTCTTCAGAAGGTGCACAGATAAACAACAACCAGGTGGTCTAATAGAGGATCCAAGAGCAAGTCTTGATAGCATAGTGATCCAGTCTGAATTTGGTGACTCGGAGGTGGAGAGTGAGAAATCAACCTGCGAAGATACCAGAGAATTAGAGGAAAAAGCATTTAAAGGAGCACAAAGGTGCATGAAAGTCTGGTCTAGATCAATATCACTGTTTGCAGATGACCCTGCTGAGCAGAAGCTTGGGTGGCCACTTCTCCGCAGGGCCCATTCAGAATACTCTCATGCAAAGGACATGTCTGTAGTACAATGGGTATTGAGCTTACCAGATCGTTCACCACAAAAAATTCCACACTGCTCCACCATTGAGGACAATTGCATCAGCTATAGAAAAGTTTCAACTCCATCTGTCAAGCTGCCAAAGGGCCTGGAAGGGATTTTAGACGTTAATATATTCAATTGCAAGTTGTTCAGCCTTGAGGTTCTTAAGTCCTGTACTTGTCAATTCTCTTCAGAAAATCTGATTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAATTCTGCCTGATGGGAAGCCAATCGCAGTCAAAATTTTGAAGTCATCAAAAGAAGCCTTGAAAGATTTTGCCCGTGAGGTGCAAATAATGTCCTCATTGAAGCACGCAAGCATCACCTCTCTACTTGGGATTTGCATTGAAGACAGTGCTTTAATCTCTGTTTATGATTATTTCCCCAAAGGAAGCTTAGAGGAAAATCTACACGGCAAGAACAAGGATGGATCTTTCTTGTCATGGGAAGTCAGATTTAATGTAGCTGTTGGGATTGCTGAAGCACTCAATTATCTACACAATGAAACCTCGAAGCATATTATACATAGAGATGTCAAGTCCTCAAACATTCTTCTTTCCCATGGGTTTGAGCCACAGTTATCTGATTTTGGACTTGCCATGTGGGGACCAACAACTTCATCTTTCGTGACACGGGAAGACGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAAGGTCAGTGATAAGGTAGACGTATATGCCTTTGGTGTAGTGTTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCCGAGGCTCGCAAAGGTGAGGAGAGCTTGGTCGTATGGGCAAAACCAATATTAGAGAGTGGGGATGTTAAAGACTTATTGGATCCAAATTTACAAGGGAAGTTTGATGTGGCCCAAATGCAAAAATTGGTTCTGGCAGCATCTCTGTGCGTTACACGGGCCGCGCGGCTTCGTCCTACATTGAACCAGATACTGAAGATTTTAAAAGGATATGATGAGGAAGTTGAAAACTTTAATTCCCACGAGAATAATCATGACCATTCGGAAAATCAAGAAAATATTGATGATGAAGTCTATCCAAATTCAAGTGCAGAGTTGCACCTGGGCCTTGCATTACTTGATGTTGACAATGACACGACATCATATAGTAGTACAGAACACAGCAATATTGAACATTTGAAAGAACAATGGAGCAGATCATCTAGTTTCAATTAG 1935 0.4274 MAVKRRFVLVGIRMDSHSRQLLNWALVKVAEPGDSVIAIHVVTTPDCVSKSKPLVDGYLEVYQGLCDVNKVGLSGQILIGSSIRDILVREAKNRAALALVVGGGASTAKYCAKRLPPTTNVLAIQGARIVFRRCTDKQQPGGLIEDPRASLDSIVIQSEFGDSEVESEKSTCEDTRELEEKAFKGAQRCMKVWSRSISLFADDPAEQKLGWPLLRRAHSEYSHAKDMSVVQWVLSLPDRSPQKIPHCSTIEDNCISYRKVSTPSVKLPKGLEGILDVNIFNCKLFSLEVLKSCTCQFSSENLIGKGGSNRVYKGILPDGKPIAVKILKSSKEALKDFAREVQIMSSLKHASITSLLGICIEDSALISVYDYFPKGSLEENLHGKNKDGSFLSWEVRFNVAVGIAEALNYLHNETSKHIIHRDVKSSNILLSHGFEPQLSDFGLAMWGPTTSSFVTREDVVGTFGYLAPEYFMYGKVSDKVDVYAFGVVLLELISGREPISSEARKGEESLVVWAKPILESGDVKDLLDPNLQGKFDVAQMQKLVLAASLCVTRAARLRPTLNQILKILKGYDEEVENFNSHENNHDHSENQENIDDEVYPNSSAELHLGLALLDVDNDTTSYSSTEHSNIEHLKEQWSRSSSFN 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00049 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Gabi3247g00049 644 Gene3D Phosphorylase Kinase; domain 1 273 371 - -
Gabi3247g00049 644 CDD USP_Like 8 116 - -
Gabi3247g00049 644 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 266 371 - -
Gabi3247g00049 644 ProSiteProfiles Protein kinase domain profile. 297 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3247g00049 644 Pfam Protein kinase domain 298 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3247g00049 644 FunFam Putative receptor-like serine/threonine-protein kinase 372 584 - -
Gabi3247g00049 644 PANTHER OS08G0249100 PROTEIN 188 594 IPR046958 -
Gabi3247g00049 644 SUPERFAMILY Protein kinase-like (PK-like) 279 568 IPR011009 -
Gabi3247g00049 644 SMART serkin_6 297 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3247g00049 644 Gene3D Transferase(Phosphotransferase) domain 1 372 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3247g00049 Gabi-Chr3247 291275 294232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3247g00049 285 595 Trihelix Transcription Factor Family AT1G70460 42.138 1.90e-71 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi3247g00049 Pkinase 7.5e-43 CL0016