Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00024 ATGGTGGTTGGGCAAGTTCCTCTTCCTTCTTCAAAGTTGGTCCTTAAACTCAAATCCAATGGTCTCAGAGGTGGCTATGGGCATGGCTATTCTCTCACACTCACACCCAGTCCCACACACATACTCTCTTCCTCTTCCTCTTCCTCTTTCTCTTTAAGCGCCTCCGCCAATGAACACACAACAACGTCCAATAACGGTGGCAATCTTCACTCTACTCTTGATAATGATTCTTCATCAAACTCTCCCTCAAAACTATCATCGAATTTTGGAAGATTAAAAGCTCAGCGAGTGAAAGCTCTTATCCACCGAGCCAAGGAGCAAAAACGCAGTGTTGATGATAACCTAGTTGTAAAACGTGCACCATTTTCCAAACGTATTGATATTGAAGATGAAAACCCTGATGTTACCAATAAAGCGAGTTCAGGTTCAGGTTCAGGTGCAAGACGTTCTCCCTCTCATTCAAGTGGATGGGGGTATAGTCCTCCTAAGCCTCAAACGCAGAAGAAGGAACAGAGAAAACAATTGCCTGACAACAACTTTTTCAGTCTCAAGTCATTCAAAGATATAGGCTACAGTGACTATATCATCCAATCCCTTAAAAAACAATCTCTTACGCGCCCTTCCCATGTACAGGCCATGGCATTTAAACCTGTTGTTGGCGGAAAGACTTGTGTCGTAGCTGATCAAAGCGGTTCTGGAAAGACATTAGCTTATCTTGCACCAATAGTTCAGCGTCTTAGACAAGAAGAACTAGAAGGACTTAGTAAATCCTCTCCGCAAGCCCCTAGAGTGGTTATAATGGCACCGACAGCTGAGTTAGCTTCTCAGGTCTTAAATAATTGTCGATCATTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACAGGTGGATTTAAGCAAAAAACTCAACTGGAAAATTTACAGCAGGGTGTTGATGTCTTAATAGCTACACCTGGCCGTTTTTTGTTACTGATAAAGGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCCGTGTTGGATGAGGTAGATATACTCTTTGGTGATGAGGACTTCGAAGGGGCTCTTCAATGCTTGATTAATTCTTCACCGGTCGACACACAATATTTATTTGTGACTGCGACTTTACCAAAAAATGTTTACAGCAAACTTGTTGAACTTTTTCCCGATTGTGAAATGATCATGGGACCTAGTATGCACCGAATAAGCTCTCGCCTTGAAGAGATTATAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACCGCATTTTTGAACAAAAAAGATGCTCTTCTGCAGCTTATGGAGGAAAGCCCTGTCCCGAGAACTATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAAAATTCATTAAAGCGTATTGATAAGAAAGGAACTCGCATTCAAGTTCTACCTTTCCATGCTGCAATGACACAAGAATCACGGCTTGCTAGTATGGGAGAGTTCACACATTCTCCGTCAAAAGAAGTCTCCCAGTTTATGGTTTGCACCGACAGAGCATCACGGGGAATTGACTTCGCGAGAGTGGATCATGTGATACTATTTGACTTTCCACGTGATCCAAGTGAATATGTACGTCGTGTTGGAAGAACAGCGAGAGGAGCTAGCGGAAAGGGGAAGGCATATATATTTGTAGTTGGGAAGCAAGTATCACTTGCACGCAAAATAATGGAAAGAAATCAGAAGGGTCATCCACTACATGATGTACCTTCGGCTTATGAGCTCATGAGATGA 1776 0.4217 MVVGQVPLPSSKLVLKLKSNGLRGGYGHGYSLTLTPSPTHILSSSSSSSFSLSASANEHTTTSNNGGNLHSTLDNDSSSNSPSKLSSNFGRLKAQRVKALIHRAKEQKRSVDDNLVVKRAPFSKRIDIEDENPDVTNKASSGSGSGARRSPSHSSGWGYSPPKPQTQKKEQRKQLPDNNFFSLKSFKDIGYSDYIIQSLKKQSLTRPSHVQAMAFKPVVGGKTCVVADQSGSGKTLAYLAPIVQRLRQEELEGLSKSSPQAPRVVIMAPTAELASQVLNNCRSLSKSGVPFKSMVVTGGFKQKTQLENLQQGVDVLIATPGRFLLLIKEGFLQLTNLRCAVLDEVDILFGDEDFEGALQCLINSSPVDTQYLFVTATLPKNVYSKLVELFPDCEMIMGPSMHRISSRLEEIIVDCSGEDGQEKTPDTAFLNKKDALLQLMEESPVPRTIVFCNKIETCRKVENSLKRIDKKGTRIQVLPFHAAMTQESRLASMGEFTHSPSKEVSQFMVCTDRASRGIDFARVDHVILFDFPRDPSEYVRRVGRTARGASGKGKAYIFVVGKQVSLARKIMERNQKGHPLHDVPSAYELMR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00024 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 431 591 IPR001650 -
Gabi3247g00024 591 MobiDBLite consensus disorder prediction 135 165 - -
Gabi3247g00024 591 CDD DEADc 195 390 - -
Gabi3247g00024 591 Gene3D - 160 396 IPR027417 -
Gabi3247g00024 591 SMART helicmild6 459 549 IPR001650 -
Gabi3247g00024 591 CDD SF2_C_DEAD 408 559 - -
Gabi3247g00024 591 Gene3D - 422 588 IPR027417 -
Gabi3247g00024 591 Pfam DEAD/DEAH box helicase 209 382 IPR011545 GO:0003676|GO:0005524
Gabi3247g00024 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 184 212 IPR014014 GO:0003724
Gabi3247g00024 591 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 108 588 - -
Gabi3247g00024 591 Pfam Helicase conserved C-terminal domain 432 548 IPR001650 -
Gabi3247g00024 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 396 IPR014001 -
Gabi3247g00024 591 SMART ultradead3 203 411 IPR014001 -
Gabi3247g00024 591 MobiDBLite consensus disorder prediction 43 89 - -
Gabi3247g00024 591 MobiDBLite consensus disorder prediction 127 177 - -
Gabi3247g00024 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 571 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3247g00024 Gabi-Chr3247 138915 145494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3247g00024 183 570 Eukaryotic Initiation Factors Gene Family AT3G19760 25.258 2.88e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3247g00024 K13179 - gmx:100780849 735.332