Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00023 ATGTCAACCATGGAGATTGATCTTGAGCTGCCTATATATGAGCATGAGAAGCTTGATATTGGATCTAATGGAAATGATGTTGCCGATACTGCATGTAATATACATGTTGAGGAGCAAAGAATTAATCCTTCTCCAATGACTGAACACTATGAGGAAGTTTTAAGTGAAAATGCTTTCTGTTGCCAGGAACAGGTGGATTTGAATTCCAATCAGGTGGATGCTATTGATAAAAATCCCTTTGAAGAGCCACAGAATGGCTTGGAATTTGAATCAAAGGAGGCTGCGTATTCTTTCTACAGAGAATATGCTCGCTCAGTGGGATTTGGCATAACAATAAAAGCCAGTAGACGCTCAAAAAAGTGTGGTAAATTTATTGATATTAAAATTGCTTGTTCCAGATTTGGAAGTAAGCGGGAGTCCAGTACAACTGTTAGTCCACGACCGTGTATAAAGACAGACTGTAAGGCTGGCATGCATATGAAGAAGAAGCTAGACGGTAACTGGGTCATATACAATTTTGTAAAAGAGCATAATCATGAGATCTGCCCAGATGATTTTTTCAGGGGGCGGAACAAACTTACAAGTAATGTAGCTTGTCAGAAGAAGGGTATGCAATTGGCTCTAGATGAGGGAGATATTCAGGTGATGATTGAATACTTTGTGTCTATGCAGGGTGAGAATCCAAACTTCTTTTATGCAATAGACCTGGATCAGAATAGACATTTGAGAAATGTATTTTGGGTTGACTCAAAGGGAAGACTTGATTATCAAAACTTCCATGATGTTGTTTTGATTGACACTTTTTACATGAAAAACAAGTATAAAATTCCTTTTGTTCCTATTGTGGGAGTCAACCATCACTTCCAGTACACTTTACTTGGATGTGCACTGGTTGGGGAGGAGACTGTTTCAGCTTTTATATGGTTAATGCGAACATGGCTAAAAGCAATGAGTAGCCTATCTCCAAAGGTGATTATCACCGACCATGAGAAATTCTTGAAAGAAGCAGTTGTAGAAGTGTTTCCGGATACACATCATTGTTTCTGTCTATGGCATATTGTACATAAAATCACCAAGAATTTGGGTTATATCATAAATCAAAATAATAATTTTATGGAAAAATTTGACAAATGCATTCATCATTCCTGTTCGGATGAGCAGTTTGAAAAGAGATGGTGGAAACTGATCAATAGATTTGAACTAAAGGACAATGAATGGGTTAAATCATTGTATGAAGATCGTAAAAAGTGGGTGCTCACATACATGCGGGATGTTTGTCTGGCTGGACTGTCAACAACTGTAAGGTCTGAAAGTGCAGCATCTTCCTTTGACAGCTATATTTGTGCCGATTCTACCTTTAAAGAGTTTATTGAACGGTATAAAGTTTTCTCTACAAACAGTTTTGACCTGGAAGCCAAAGCTGACTTTGAAACAAGACAAAAGCAACCTGCATTAAGATCTCTATCACCTTTTGAGAAGCAGCTATCAACAATTTATACAGATGCCATATTTAGAAAAATTCAGTTGGAGATATTGGGAATGGTGTCTTGTCATCTGCAGAAGAAAACAGAAAACAGGTCAAATGTAACATTTCTTGTTGATGATTTTGAGGAGCGGAAGAAATTTACTGTTTCTTGGAATGGAGCAGATTTGGATGTCTTTTGTTCATGTCATTTATTTCAATACAAAGGTTTTCTGTGTAGACATGCAATTCTTGTCATTCAGATGTCTGGTATAACCAACATTCCATCAAATTATATTTTAAAACGATGGACAAAAGATGCAAAGGCCAATCAATTTTCTGGTGACCTAATTAGCAGAACTGCTAGTAGAGTGCAACGTTTTAATGATCTTTGTAGGCGGGCTATTAGATTAAGTGAAATTGGGTCTTTATCTGAAGATACTTACCGTATTGCATCTCAGGCTTTGGAAGAAGTCTATAAACAGTGTGTGACTAGAAGCACTTTAGAGTCCAACAAGTTGGCTGTTGATGTTGAAGAGAAGAATTCTGGCTGCCATCGGACAAAGTCTACAAAGAAAAAGAAGTCATGTAATAGAAGGGAATGCTTTGATCCAGAAAAAATCAACATCAAGATGCTGGACGGCTTCCAAAAGGGGGAACAGAGAAATTCGAGAGCACACAACTTTGATAATTGTTATATTTCTCAACTGGACACGCAAACAGTGAACTTGGATTCTAGAGCTTCAACTCTTGATGGCTATTATGGGGCTCAACAGAATGTGCTTGGAGACGCACAGCTGAACTCAGTATCTATCATGCATGATGGCTATTATAGCAGTCAACAGGCCAATCTGGGGATGGGGCAAATGCATTCCGTGCCAAACCGCGGTCCATATTATGGGATGCAGCACAGCATGCAAGGACTGTTTGGGGGACAGCTTACTTTCAGAACGCCAACAGTGCATGAGTGTTTTGAGCTTCAAGATAGTGTACAAGATATGGAACAACCTATTAGGGCCTCGCAGTTCCATGGCATTACATCAAAGCAACTAGATGTTGATAAATCACTTTCCTGA 2538 0.3861 MSTMEIDLELPIYEHEKLDIGSNGNDVADTACNIHVEEQRINPSPMTEHYEEVLSENAFCCQEQVDLNSNQVDAIDKNPFEEPQNGLEFESKEAAYSFYREYARSVGFGITIKASRRSKKCGKFIDIKIACSRFGSKRESSTTVSPRPCIKTDCKAGMHMKKKLDGNWVIYNFVKEHNHEICPDDFFRGRNKLTSNVACQKKGMQLALDEGDIQVMIEYFVSMQGENPNFFYAIDLDQNRHLRNVFWVDSKGRLDYQNFHDVVLIDTFYMKNKYKIPFVPIVGVNHHFQYTLLGCALVGEETVSAFIWLMRTWLKAMSSLSPKVIITDHEKFLKEAVVEVFPDTHHCFCLWHIVHKITKNLGYIINQNNNFMEKFDKCIHHSCSDEQFEKRWWKLINRFELKDNEWVKSLYEDRKKWVLTYMRDVCLAGLSTTVRSESAASSFDSYICADSTFKEFIERYKVFSTNSFDLEAKADFETRQKQPALRSLSPFEKQLSTIYTDAIFRKIQLEILGMVSCHLQKKTENRSNVTFLVDDFEERKKFTVSWNGADLDVFCSCHLFQYKGFLCRHAILVIQMSGITNIPSNYILKRWTKDAKANQFSGDLISRTASRVQRFNDLCRRAIRLSEIGSLSEDTYRIASQALEEVYKQCVTRSTLESNKLAVDVEEKNSGCHRTKSTKKKKSCNRRECFDPEKINIKMLDGFQKGEQRNSRAHNFDNCYISQLDTQTVNLDSRASTLDGYYGAQQNVLGDAQLNSVSIMHDGYYSSQQANLGMGQMHSVPNRGPYYGMQHSMQGLFGGQLTFRTPTVHECFELQDSVQDMEQPIRASQFHGITSKQLDVDKSLS 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00023 845 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 68 650 IPR031052 GO:0006355
Gabi3247g00023 845 Pfam FAR1 DNA-binding domain 97 182 IPR004330 -
Gabi3247g00023 845 Pfam MULE transposase domain 262 355 IPR018289 -
Gabi3247g00023 845 ProSiteProfiles Zinc finger SWIM-type profile. 542 578 IPR007527 GO:0008270
Gabi3247g00023 845 SMART 26again6 553 580 IPR006564 GO:0008270
Gabi3247g00023 845 Pfam SWIM zinc finger 544 576 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3247g00023 Gabi-Chr3247 132682 137780 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi3247g00023 MULE 2e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3247g00023 - - gmx:100802811 1308.12