Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00020 ATGGTGAGTGGTGAGCAAAATGTGGCAACAATGAAAATGCGTAGCCCAACGATCAAGCAATCTGCATCAGATACAAACCTGTCCCGCCGCCACAACTTCCGGTCGAAATCTTCATCTTCAAAAACTGTGAGAAGGCCTAAACAAAGCAATGGTCGTTCCTTGTCATCAGTGAACCTCCAACCATATGACATCTATGGCGAGTCTTCTAATAGTCCATACTATAAGGGTCTCACAGATCAATCCCTTGCTGTTAGTTCCTGCCCTGCACCTCACTCTTCTACCTCTAACCTCCTTCCATCTGGACATAGTCCATACTACAAAGGTCTTACAGATTATTCCCTTGTTATTGATTCTTGGAGCCCTGTGCTTCAGAACAATCCTGCCAACAACTCCCTTCCACACGAGTGTAGTCCATACTATAGGGGTCTCATAGATTACTCCCTTGCACTTCATCGACCACAGCTATCACCCCCTAAGATTAAGAATCACTCTACTTTGGAGGAGTTGATGACTAAGATGGTCGATGATGATGTTGCCTTTCTGACTGAAGAGAAGCCACTGAGGGAGAAAGAATCAGAAGCAATTAAGGTTGGGAGTGTATTAGAAGAAAATGCAAAGAAAACAATTGTGGAGGAGATCGAATTGATGACAAAAGAGGTGATTGAAGAGAAGTCATTGAGGGAGAGAGTATCAGAGGCAAGTATAATTGAGAATAATGTATTGGAAGAAAAAACAGATAAAATAATTTTGGAGGAGATGGAGCTGATGACAAAAGGGGTCGATGATTGTGATGTTGGGTTGGAGATTAAAGAGAAGCCATCGAGGGACAGGAGAGTATCAGAGGCTAGTAAGGTTGAGAGTGTATTAGAAGGAAATGCAGAGAAAACAATTTTGGAGTTGATGACAAAGGAGGCTGGCGATGGTATTGGTGATGTTGGGTTGGTGATTGAAAAGAAGCCCTTGAGAGAGAGAGTATCAGAAGCAAGCAATGTTGAGAAAGTATTACAAGAAAATGCAGAGAAAGACAAAGCAGAAGAAGGAAAATTGTACGAGTATTTGTGGGCAACCAAATACCAGCCCATGACCTTGGCAGACTTCATATGCAACAGAGATACAGCACTTCAGCTGAAAGAATTGGTAAAAGAGGGGTGTGGCTGTAATCATTTTATATTTGAAGGACCACCAAGTGCAGGAAAGAGATCCATGATACGGGCTATGCTTCGAGAGGTATTTGGCGCTGACAGAGTACAGGTCATAGAAGAATGTAAAGACTTCAACTGGAAGGGAGAAATGATTGATAATCTCCAAGTGCGCATAAATAAATCACTACATCATGTTGAGGTCAATCTCTCAGAGACAAAGGGATATGAAAAGCATGTAATTGTTGATTTATTCAAAGAAACATATGGGAAGATCATAAATAACTCAATGCCTTGTACCCCTGAAAATTGCCAAGCGATCATTTTGTATGAGGCGGAGAAGCTATCGAGGGAATCCTTGTTGTATATAAAATGGCTACTAGAAAAGTACAAAGGGTGTAATAAGGTGTTCTTTTGTTGCTCTGATGGATCAAAGCTCCAACTTGTCAAACCACTTTGCACCATTGTCCGCCTTTCATCACCATCAAGCCAAGAGATTGTTAAGATATTGGAATATATTGGAAAAGAAGAAGGAATAAAACTATCACCGGACTTAGTAAAGAAGATTATTTTGAGGTCCAGAAACAATCTCCGCCAAGCCATTCGTTCATTGGAGGCCACTTGCCGAAACAAGGATTCCCTAAAAGACGACGATTTAGTTTTAACTGGATGGGAAGATGATATTTTGAATATTGCTAAGAATATAATTGAAGAGCAAAGTCCAAGACAGTTGTACGTCATTCGTAGAAAGCTTCAAAGCCTCATGATTCATGATGTTGCTCCTGGGTTTATTTACAAGTCTTTGGTAGCAGGGTTAACGAGTCTAGTTGATGACTCACTACGCTCAGGGGTTGCCAAACTCGACAAGGAATACAACAAAGCTAGTGAAATCAAATTTGAGACTATGAAGCAATTCGGTCATGTTCAAAACAAACAAGTGGAATCTGATGAAAGGAACAAGGAGCCAACAAAAAAGAATACGTTAAGTTACTTGAAAGTTGAAGAGTTTATAGCGAAATTCATGAGCTGGTACAAGAATTCGTCTGTAAAAAGTGGCAAGCATGTGCAACTATTTGGTGGAACATTATAA 2229 0.406 MVSGEQNVATMKMRSPTIKQSASDTNLSRRHNFRSKSSSSKTVRRPKQSNGRSLSSVNLQPYDIYGESSNSPYYKGLTDQSLAVSSCPAPHSSTSNLLPSGHSPYYKGLTDYSLVIDSWSPVLQNNPANNSLPHECSPYYRGLIDYSLALHRPQLSPPKIKNHSTLEELMTKMVDDDVAFLTEEKPLREKESEAIKVGSVLEENAKKTIVEEIELMTKEVIEEKSLRERVSEASIIENNVLEEKTDKIILEEMELMTKGVDDCDVGLEIKEKPSRDRRVSEASKVESVLEGNAEKTILELMTKEAGDGIGDVGLVIEKKPLRERVSEASNVEKVLQENAEKDKAEEGKLYEYLWATKYQPMTLADFICNRDTALQLKELVKEGCGCNHFIFEGPPSAGKRSMIRAMLREVFGADRVQVIEECKDFNWKGEMIDNLQVRINKSLHHVEVNLSETKGYEKHVIVDLFKETYGKIINNSMPCTPENCQAIILYEAEKLSRESLLYIKWLLEKYKGCNKVFFCCSDGSKLQLVKPLCTIVRLSSPSSQEIVKILEYIGKEEGIKLSPDLVKKIILRSRNNLRQAIRSLEATCRNKDSLKDDDLVLTGWEDDILNIAKNIIEEQSPRQLYVIRRKLQSLMIHDVAPGFIYKSLVAGLTSLVDDSLRSGVAKLDKEYNKASEIKFETMKQFGHVQNKQVESDERNKEPTKKNTLSYLKVEEFIAKFMSWYKNSSVKSGKHVQLFGGTL 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00020 742 MobiDBLite consensus disorder prediction 1 58 - -
Gabi3247g00020 742 SUPERFAMILY post-AAA+ oligomerization domain-like 603 672 IPR008921 GO:0003677|GO:0006260
Gabi3247g00020 742 Gene3D - 542 602 - -
Gabi3247g00020 742 Gene3D - 603 724 - -
Gabi3247g00020 742 FunFam Replication factor C subunit 3 352 541 - -
Gabi3247g00020 742 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 354 685 - -
Gabi3247g00020 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 598 IPR027417 -
Gabi3247g00020 742 MobiDBLite consensus disorder prediction 1 28 - -
Gabi3247g00020 742 MobiDBLite consensus disorder prediction 42 58 - -
Gabi3247g00020 742 CDD HLD_clamp_RFC 541 599 - -
Gabi3247g00020 742 FunFam replication factor C subunit 3 542 600 - -
Gabi3247g00020 742 Gene3D - 352 541 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3247g00020 353 726 Core DNA Replication Machinery Family AT5G27740 30.155 1.66e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3247g00020 K10756 - gmx:102664389 768.844