Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00003 ATGTTAATACAAAGTTCTCTTGGTTCAGTTGAAGCTGGTCTATGTTACGTATCTGATGATGAGAAAGATGTTCTATGTGACCGGATGCCTAGTGATGAAACTTGGCAGGTGTGTCTGAAATGCAACAAGTACCCCCTTAACTGGTGTAGAAAAGCTGAACCAATGGAAGAGAATGGAAGGAATGCTGATGGTCCTCGCAATGCAAACTTTCTAAGTAGCTTTGGTCGGCCATCAACTGCAAGTATAATGACTGAAAACACTGCACGTAATATGGTATACAGGAGAAAGAAGCTACGTAAGGACTCAATTACCTCTCTTTTTAAGCAAGGGCCAACTAATATGCAGACAAGTGTCAATTGCCCTTCAGTTATAAGTTCCTCTGCGCGTTTATCATCAGCTGAGGATCAGCCAGCTGGTTTTCAAGTTAAGCATCAAATTGAAATGGTTAAAGATCCTACTGTGCCATCTGTTTCATTTGATGGAGTAGCCAAAGATAACAGACAAAACACCGTAGGTATTGACAGTGTAAATGATAGTTGCTCCTCTTCAAAGTCAAATATTGAACCTGCTTCAGATTCCATAGAAACTGAAATGGATGAATCTGGTGAATGCTCCTCCTCCAGTGTAATAGTTATAGATGCCACAAGGGAAGAATTAACTGAAAAGGATTTCTGCATTAATATATTAAGAAGCCATGGACTTCTTGGAAGAGATTCTCTTGCAGATAATTTGGATTCAGTGGAAAATGCTGTTACCACTGGTAATAGCTGCTGTTCCAGGTCATGCAAAATATGTGGTAATTTGGACAGTTCATTGAAGATGCTTTTATGTGATCGTTGTGAAGATGCATATCATCCATCTTGCTACAATCCACGTTTGAAAAAATTACCAATTGACGAGTGGTTTTGTCATTCATGTCTTAAAAAAAGGCAGAAAATTCTTAAGGAGACAATTATCAGATCACCAGGCCACCAGAGTGATATGGGCAAATGTAGAACTGCCTCAGTTAAGGCTGAATTGAATCCCATACTAATGATGTTGAGAGACACTGAGCCATATACAACCCGTGTGAGGGTTGGCAAAGGTTTTCAAGCAGAAGTACTTGACTGGTCAGCGCCAATAAGAAGTGATGAAGATGATCTTCCTGAACCATTTGAAATTAATCCTTCAGAATTTTCTAGACTACAGGAAGAGAATCTGAGAAATCCAACTAGACTCAGTTCCATTGGTAATTGGCTTCAATGTCGGGAGGTTATAGATAGAGCCAATGGAACTGTATGTGGTAAATGGCGCAGGGCTCCGCTTTTTGAAGTTCAAACTGATGATTGGGAATGCTTCTGTGCAATCCATTGGGATCCATATCATGCTGATTGTGCTGTACCTCAGGAGGTGGAAACAGATCAAGTTCTGAAGCAACTCAAGTATATAGAAGCGCTGAGGCCGCGACTTGCTCCTAAACAAAGAAATTCAGATAGAACGAATAATGGTGATTGA 1494 0.4029 MLIQSSLGSVEAGLCYVSDDEKDVLCDRMPSDETWQVCLKCNKYPLNWCRKAEPMEENGRNADGPRNANFLSSFGRPSTASIMTENTARNMVYRRKKLRKDSITSLFKQGPTNMQTSVNCPSVISSSARLSSAEDQPAGFQVKHQIEMVKDPTVPSVSFDGVAKDNRQNTVGIDSVNDSCSSSKSNIEPASDSIETEMDESGECSSSSVIVIDATREELTEKDFCINILRSHGLLGRDSLADNLDSVENAVTTGNSCCSRSCKICGNLDSSLKMLLCDRCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKILKETIIRSPGHQSDMGKCRTASVKAELNPILMMLRDTEPYTTRVRVGKGFQAEVLDWSAPIRSDEDDLPEPFEINPSEFSRLQEENLRNPTRLSSIGNWLQCREVIDRANGTVCGKWRRAPLFEVQTDDWECFCAIHWDPYHADCAVPQEVETDQVLKQLKYIEALRPRLAPKQRNSDRTNNGD 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00003 497 Gene3D - 410 475 - -
Gabi3247g00003 497 FunFam RING/FYVE/PHD zinc finger superfamily protein 249 327 - -
Gabi3247g00003 497 ProSitePatterns Zinc finger PHD-type signature. 262 306 IPR019786 -
Gabi3247g00003 497 FunFam uncharacterized protein LOC106759733 isoform X4 410 475 - -
Gabi3247g00003 497 SUPERFAMILY FYVE/PHD zinc finger 240 311 IPR011011 -
Gabi3247g00003 497 ProSiteProfiles Zinc finger CW-type profile. 406 466 IPR011124 GO:0008270
Gabi3247g00003 497 SMART PHD_3 261 307 IPR001965 -
Gabi3247g00003 497 MobiDBLite consensus disorder prediction 174 199 - -
Gabi3247g00003 497 ProSiteProfiles Zinc finger PHD-type profile. 259 309 IPR019787 -
Gabi3247g00003 497 Pfam PHD-finger 262 308 IPR019787 -
Gabi3247g00003 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 330 IPR013083 -
Gabi3247g00003 497 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 247 315 IPR047171 GO:0006338
Gabi3247g00003 497 MobiDBLite consensus disorder prediction 174 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3247g00003 Gabi-Chr3247 23295 48421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3247g00003 262 307 C2H2 Transcription Factor Family AT3G01460 43.478 6.05e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3247g00003 PHD 1.1e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3247g00003 - - gmx:100813057 770.385