Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3247g00002 ATGCCTAGTGATGAAACTTGGCAGGTGTGTCTGAAATGCAACAAGTACCCCCTTAACTGGTGTAGAAAAGCTGAACCAATGGAAGAGAATGGAAGGAATGCTGATGGTCCTCGCAATGCAAACTTTCTAAGTAGCTTTGGTCGGCCATCAACTGCAAGTATAATGACTGAAAACACTGCACGTAATATGGTATACAGGAGAAAGAAGCTACGTAAGGACTCAATTACCTCTCTTTTTAAGCAAGGGCCAACTAATATGCAGACAAGTGTCAATTGCCCTTCAGTTATAAGTTCCTCTGCGCGTTTATCATCAGCTGAGGATCAGCCAGCTGGTTTTCAAGTTAAGCATCAAATTGAAATGGTTAAAGATCCTACTGTGCCATCTGTTTCATTTGATGGAGTAGCCAAAGATAACAGACAAAACACCGTAGGTATTGACAGTGTAAATGATAGTTGCTCCTCTTCAAAGTCAAATATTGAACCTGCTTCAGATTCCATAGAAACTGAAATGGATGAATCTGGTGAATGCTCCTCCTCCAGTGTAATAGTTATAGATGCCACAAGGGAAGAATTAACTGAAAAGGATTTCTGCATTAATATATTAAGAAGCCATGGACTTCTTGGAAGAGATTCTCTTGCAGATAATTTGGATTCAGTGGAAAATGCTGTTACCACTGGTAATAGCTGCTGTTCCAGGTCATGCAAAATATGTGGTAATTTGGACAGTTCATTGAAGATGCTTTTATGTGATCGTTGTGAAGATGCATATCATCCATCTTGCTACAATCCACGTTTGAAAAAATTACCAATTGACGAGTGGTTTTGTCATTCATGTCTTAAAAAAAGGCAGAAAATTCTTAAGGAGACAATTATCAGATCACCAGGCCACCAGAGTGATATGGGCAAATGTAGAACTGCCTCAGTTAAGGCTGAATTGAATCCCATACTAATGATGTTGAGAGACACTGAGCCATATACAACCCGTGTGAGGGTTGGCAAAGGTTTTCAAGCAGAAGTACTTGACTGGTCAGCGCCAATAAGAAGTGATGAAGATGATCTTCCTGAACCATTTGAAATTAATCCTTCAGAATTTTCTAGACTACAGGAAGAGAATCTGAGAAATCCAACTAGACTCAGTTCCATTGGTAATTGGCTTCAATGTCGGGAGGTTATAGATAGAGCCAATGGAACTGTATGTGGTAAATGGCGCAGGGCTCCGCTTTTTGAAGTTCAAACTGATGATTGGGAATGCTTCTGTGCAATCCATTGGGATCCATATCATGCTGATTGTGCTGTACCTCAGGAGGTGGAAACAGATCAAGTTCTGAAGCAACTCAAGTATATAGAAGCGCTGAGGCCGCGACTTGCTCCTAAACAAAGAAATTCAGATAGAACGAATAATGGTGATTGA 1410 0.4043 MPSDETWQVCLKCNKYPLNWCRKAEPMEENGRNADGPRNANFLSSFGRPSTASIMTENTARNMVYRRKKLRKDSITSLFKQGPTNMQTSVNCPSVISSSARLSSAEDQPAGFQVKHQIEMVKDPTVPSVSFDGVAKDNRQNTVGIDSVNDSCSSSKSNIEPASDSIETEMDESGECSSSSVIVIDATREELTEKDFCINILRSHGLLGRDSLADNLDSVENAVTTGNSCCSRSCKICGNLDSSLKMLLCDRCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKILKETIIRSPGHQSDMGKCRTASVKAELNPILMMLRDTEPYTTRVRVGKGFQAEVLDWSAPIRSDEDDLPEPFEINPSEFSRLQEENLRNPTRLSSIGNWLQCREVIDRANGTVCGKWRRAPLFEVQTDDWECFCAIHWDPYHADCAVPQEVETDQVLKQLKYIEALRPRLAPKQRNSDRTNNGD 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3247g00002 469 FunFam RING/FYVE/PHD zinc finger superfamily protein 221 299 - -
Gabi3247g00002 469 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 219 287 IPR047171 GO:0006338
Gabi3247g00002 469 ProSiteProfiles Zinc finger PHD-type profile. 231 281 IPR019787 -
Gabi3247g00002 469 MobiDBLite consensus disorder prediction 145 164 - -
Gabi3247g00002 469 Gene3D - 382 447 - -
Gabi3247g00002 469 MobiDBLite consensus disorder prediction 145 171 - -
Gabi3247g00002 469 ProSiteProfiles Zinc finger CW-type profile. 378 438 IPR011124 GO:0008270
Gabi3247g00002 469 Pfam PHD-finger 234 280 IPR019787 -
Gabi3247g00002 469 FunFam uncharacterized protein LOC106759733 isoform X4 382 447 - -
Gabi3247g00002 469 ProSitePatterns Zinc finger PHD-type signature. 234 278 IPR019786 -
Gabi3247g00002 469 SMART PHD_3 233 279 IPR001965 -
Gabi3247g00002 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 290 IPR013083 -
Gabi3247g00002 469 SUPERFAMILY FYVE/PHD zinc finger 212 283 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3247g00002 Gabi-Chr3247 23295 48421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3247g00002 234 279 C2H2 Transcription Factor Family AT3G01460 43.478 4.74e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3247g00002 PHD 1e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3247g00002 - - gmx:100813057 726.087