Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3243g00002 ATGATCTCAAGCTTGTTCATAGCAACAGTAGCAACCCCATCAGGAAATGAAACTGATCTTCATGCTTTACTTGACTTCAAGAATAAGATAGTTGAAGATCCATTACACATCATGAGTTTTTGGAATGACTCCATCCATCATTGCAATTGGATAGGAATCACCTGCAACATCACCAATGGAAGGGTCATGAACCTGAGCCTTGAACAACAGAGACTTGGAGGCACTCTTACACCATCTATTGGAAACCTCACATTCCTCACCACACTCAACTTGCAAAATAATAATTTCCATGGTGAACTTCCTCAAGAAGTAGGAAATTTACTATACCTGAAACGTCTAATCTTCAGCCTCAACAACTTTGGTAGGAGCATTCCAGGTAGTCTCAATCACTGTACAGAACTAAGTATGCTAGCAGCAGGTGGTAACAATCTTACAGGAACAATTCCAACTTGGATAGGAAATCTTTCTTATTTGTCTTATATTAACTTTGCAGTGAACAACTTGCATGGAAACATACCACCTGAGATAGGCCTTTTATCAAGCTTGACATTTCTTGTAGTTTATGGGAATTACTTGTCTGGCACAGTTCCTTCATCAATCTATAACATTTCTTCCATATACTATCTCACTTTTTCTCAAAACAATCTCCATGGAAACTTACCAGCTGATGTTGGATTTACTCTTCCTAACCTTGAAGTGTTTGCTGGTGGAGTCAACAATTTCACGGGAACAATTCCTGAATCTCTTTCAAATGCATCAAGACTAGAAATTCTTGACTTTGCTGAAAATGCTCTCACTGGCTCACTTCCTAAGAACATAGGAAGATTGCCCCATTTAAAAAGACTCAATTTTGATGACAATAGACTTGGAACTGGGAAAGCTGGTAACCTGAATTTTCTTTCTTCCTTGGTTAATTGTACTGCTCTTGAAGTTTTGGGTCTTGCTCGAAATAGTTTTGGAGGAGAGTTGCCTAACTCAATAGCTAATTTCTCAAGCCAATTGCACAGATTTACCATTGGTTCCAATGGAATTCATGGAAATATACCTGCTGGGATCAGCAATCTTGCTAACCTGGCCCTTCTAGGATTGGAAGGAAACCTCCTAACTGGTAGTGTTCCTGATGCATTAGGCATGCTTCAAAGTCTTCAAATGTTGTATCTGAATGGCAACAAATTTTCTGGAAGGATACCATCCTCCTTAGGAAATTTATCGTCATTAACAAAACTCTTTATGGAGGAGAACAACTTTGAGGGAAGCATACCTTCTAGTCTTGGAAAATGCCAGAAGTTATTGGTACTTAGCCTTTACAGTAACAAGCTTAGTGGCACCATACCAAAAGAAGCCCTTAGCCTTTCCTCACTAGCAATATATTTGGATGTGTCTCATAATGCTCTATCAGGGACTCTGCCAGCTGAAGTGAGTAATCTACATAATCTTGGAGAGTTGGTGCTGTCTGAGAACAATTTCTCTGGAGTCATTCCATCTTCTCTTGGCAGCTGTATTAGCTTGGAAAGGTTGCATTTGCAGGGTAACTCTTTTGAGGGAAACATTCCTCAAACTTTGAAAAATTTGAGAGGTTTATATGATATAGATCTTTCACATAATAGATTGTCTGGTAAGATTCCTGAATTTCTTGGTGAGTTCAAAGAGCTCAAGCATCTCAATCTTTCTTTCAATGACTTTGAAGGGGAAATACCAAAGAATGGAATCTTCATGAATTCAACTGCCATTTCATTATATGGAAACAGCAAGCTATGCGGTGGTGTCCCAGAATTGAAGTTTCCTGCATGCCGCAGCATGAAAGCCTCTCTATTAAGAAAACTTCTTGCCCCCAAGGTGGCTATCCCTATAGCTAGTTCACTTGCATTTATACTCTTTCTATCATGCTTTCTTACATTCTTCCCAAAAGTAAAGAAAGCAAGAAAGAAAACTTCTATATCGACAAATGCAAAGGATTTGGAATTGCAACTTTCTTACTCAGAAATTGCAAAGTGCACTGGTGGGTTCTCTCAGGAAAACCTTATTGGCTCAGGAAGTTTTGGTTCTGTATACAAAGGAACTCTTTCAGGTGATGGATCAACAGTTGCAGTTAAGGTGTTAAATCTTCAACAAAGAGGAGCTTCAAGGAGCTTCATTGATGAATGCAAAGTTCTGAGAAGTATAAGGCATCGCAACCTTCTCAAGATCATAACTGCCATATCAAGTGTTGATCCTCAAGGTAATGACTTCAAAGCTCTAATCTTTGAGTTCATGTCTAATGGAAGTCTAGAAGATTGGTTGCATCCTATGAATAATGTGCAATATCAAACCAAGACATTGTCATTTATCCAAAGACTGAACATAGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTCCTGTGAAATTCCAATTGTTCATTGTGATATAAAGCCAAGCAATGTTCTTCTTGACAATGATATGGTTGCTCATGTTGGTGACTTTGGATTAGCCACATTTCTGTTTGAAGAAACAAGCAATTTTTCCTCACAATCAATTATATCAGCTAGATTAAGGGGTTCTATTGGATATATTCCTCCAGAGTATGGCATGTGTGACAAGCCTTCTACACTTGGAGATATCTACAGTTATGGGATACTATTACTGGAGATTTTCACAGGTAAAAGACCAACAGATGAAGCATTTGAAGGTGGCATGGGAATTCATCAGTTTATATCAATGGCTTTACCTAACCATGTCATGGACATAATTGATCCTTCATTACTGGTCTTTGAACAAAACTGTGGTGAAGAAGATCAAGAATTTGAAGAAGAAAAAGCTATAAGAAGGAACTACGAGATTGAAGCCAAGGACAAAGGTTTCATGGAGGATTGCATTGTTTCATTGATGCAAATTGGAGTCTCTTGCTCTGTAACTCTACCAAATGAACGATTGCCAATGGTTGCGGTGGTCAACAAACTACATGCAATCAAGAACTTGTATGAAGGGATGAAGCATAATGCTATATGA 2994 0.3858 MISSLFIATVATPSGNETDLHALLDFKNKIVEDPLHIMSFWNDSIHHCNWIGITCNITNGRVMNLSLEQQRLGGTLTPSIGNLTFLTTLNLQNNNFHGELPQEVGNLLYLKRLIFSLNNFGRSIPGSLNHCTELSMLAAGGNNLTGTIPTWIGNLSYLSYINFAVNNLHGNIPPEIGLLSSLTFLVVYGNYLSGTVPSSIYNISSIYYLTFSQNNLHGNLPADVGFTLPNLEVFAGGVNNFTGTIPESLSNASRLEILDFAENALTGSLPKNIGRLPHLKRLNFDDNRLGTGKAGNLNFLSSLVNCTALEVLGLARNSFGGELPNSIANFSSQLHRFTIGSNGIHGNIPAGISNLANLALLGLEGNLLTGSVPDALGMLQSLQMLYLNGNKFSGRIPSSLGNLSSLTKLFMEENNFEGSIPSSLGKCQKLLVLSLYSNKLSGTIPKEALSLSSLAIYLDVSHNALSGTLPAEVSNLHNLGELVLSENNFSGVIPSSLGSCISLERLHLQGNSFEGNIPQTLKNLRGLYDIDLSHNRLSGKIPEFLGEFKELKHLNLSFNDFEGEIPKNGIFMNSTAISLYGNSKLCGGVPELKFPACRSMKASLLRKLLAPKVAIPIASSLAFILFLSCFLTFFPKVKKARKKTSISTNAKDLELQLSYSEIAKCTGGFSQENLIGSGSFGSVYKGTLSGDGSTVAVKVLNLQQRGASRSFIDECKVLRSIRHRNLLKIITAISSVDPQGNDFKALIFEFMSNGSLEDWLHPMNNVQYQTKTLSFIQRLNIAIDVACALEYLHHSCEIPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEETSNFSSQSIISARLRGSIGYIPPEYGMCDKPSTLGDIYSYGILLLEIFTGKRPTDEAFEGGMGIHQFISMALPNHVMDIIDPSLLVFEQNCGEEDQEFEEEKAIRRNYEIEAKDKGFMEDCIVSLMQIGVSCSVTLPNERLPMVAVVNKLHAIKNLYEGMKHNAI 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3243g00002 997 SMART LRR_typ_2 403 427 IPR003591 -
Gabi3243g00002 997 SMART LRR_typ_2 83 107 IPR003591 -
Gabi3243g00002 997 SMART LRR_typ_2 379 402 IPR003591 -
Gabi3243g00002 997 SMART LRR_typ_2 548 573 IPR003591 -
Gabi3243g00002 997 SMART LRR_typ_2 355 378 IPR003591 -
Gabi3243g00002 997 SMART LRR_typ_2 476 500 IPR003591 -
Gabi3243g00002 997 Gene3D Transferase(Phosphotransferase) domain 1 751 995 - -
Gabi3243g00002 997 FunFam LRR receptor-like serine/threonine-protein kinase EFR 639 750 - -
Gabi3243g00002 997 Pfam Leucine rich repeat N-terminal domain 17 56 IPR013210 -
Gabi3243g00002 997 FunFam Leucine-rich repeat receptor-like protein kinase 16 174 - -
Gabi3243g00002 997 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 751 995 - -
Gabi3243g00002 997 FunFam LRR receptor-like serine/threonine-protein kinase EFR 295 603 - -
Gabi3243g00002 997 Gene3D Ribonuclease Inhibitor 294 603 IPR032675 -
Gabi3243g00002 997 PANTHER OS04G0122200 PROTEIN 179 986 - -
Gabi3243g00002 997 ProSiteProfiles Protein kinase domain profile. 669 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3243g00002 997 SUPERFAMILY L domain-like 333 587 - -
Gabi3243g00002 997 SMART serkin_6 669 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3243g00002 997 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 197 293 - -
Gabi3243g00002 997 SUPERFAMILY RNI-like 64 393 - -
Gabi3243g00002 997 Pfam Protein kinase domain 670 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3243g00002 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Gabi3243g00002 997 Gene3D Ribonuclease Inhibitor 171 293 IPR032675 -
Gabi3243g00002 997 Gene3D Ribonuclease Inhibitor 16 170 IPR032675 -
Gabi3243g00002 997 ProSitePatterns Protein kinases ATP-binding region signature. 675 698 IPR017441 GO:0005524
Gabi3243g00002 997 Pfam Leucine rich repeat 333 392 IPR001611 GO:0005515
Gabi3243g00002 997 Pfam Leucine rich repeat 502 561 IPR001611 GO:0005515
Gabi3243g00002 997 SUPERFAMILY Protein kinase-like (PK-like) 649 982 IPR011009 -
Gabi3243g00002 997 Gene3D Phosphorylase Kinase; domain 1 650 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3243g00002 Gabi-Chr3243 39607 42803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3243g00002 16 989 Receptor kinase-like Gene Family AT3G47570 43.452 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi3243g00002 Pkinase 5.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3243g00002 - - gmx:106794146 1503.03