Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3243g00001 ATGAGCAAATTTTGTGTAAACTCCAAGAGACTAGTATTCCATTTCCTTTATGGGTTTCTTCTCTTATGCATGAGCACATGTCAGGACTATGCAGTCACAGCAACCTTGCAAGGAAATGAAACTGATCTACATGCTTTACTTGAGTTAAAGAGTAGGGTAGTTCAAGATCCATTCAACATCATGAGTTTGTGGAATGATTCGATCTATTACTGCAACTGGGTAGGAATTACCTGCAACATCTCAAATGGAAGGGTCATGTATTTGATCCTTGCAGACAAGACACTTACTGGCACTGTTCCACCATCTATTGGAAATCTCACATTCCTCACCAGACTCAACCTTAGAAATAATAGCTTCCATGGAGAGTTTCCTCAAGAAGTAGGACATCTACTATATCTGCAACATCTAAACATTAGTTACAATTATTTTGGTGGTAGCATTCCAAGTAATCTAAGTCACTGCACAGAACTAAGTATATTGTCTGCTGGTCATAACAACTTCACAGGAACAATTCCATCATGGATAGGAAACTCTTCATCTTTGTCTCTTGTTAACCTTGCTGTGAACAACTTGCATGGAACCATACCAAATGAGGTAGGCAAACTATCAAGCTTGACACTTCTTGCACTAAATGGAAATTACTTGTCAGGAACAATCCCTCCTTCAATTTTCAATATTTCTACCTTATTCTTTTTCACTGTTTCTCAAAATCATCTGCATGGTACAATACCAGCTGATGTTGGTTTTACTCTTCCTAATCTTGAAACATTTGCTGGTGGAGTCAACAATTTCACGGGAACAATTCCTGAATCTCTTTCAAATGCATCAAGACTAGAAATTCTTGACTTTGCAGAAAATTTTCTCACTGGCACACTTCCTAAGAACATAGGAAGATTGCCTCATTTAAAAAGACTCAATTTTGATATCAATAGACTTGGAACTGGGAAAGGTGGTGAGCTGAATTTTCTTGCTTCCCTGGTTAATTGTACTGCTCTTGAAGTTTTGGGTCTTGCTCAAAATAATTTTGGAGGAGAATTGCCTGGTTCTATTGCTAATCTTTCAACCCAATTAAATATACTTACATTAGGTAGCAATGCAATACATGGAAGTATCCCTATTGGGATAGGGAACCTTGCTAACTTAACCGTACTGGGATTGGAAGAGAACAGCCTAAGTGGTTCTGTTCCTAATACAATAGGCATGCTTCAAAAGTTAAATGATTTGGAATTGAATGGCAACAACTTTTCTGGGGTAGTCCCTTCATCCATGGGAAACTTGACAAGATTAACAAAGCTACTCATGGAGGATAACAACTTTGAGGGAAGTATACCAGCAAGCCTTGGAAAATGCCAGAACTTGTTGATGCTAAATGTTAGCCATAACATGCTGAATGGTACCATACCAAGACAAGTCATTGCCTTGTCTTCTCTTTCAATTTACTTGGACTTGTCTCATAATCTTTTGACAGGGTCTGTGCCTGTTGAAGTGGGAAAGTTGGTGAATCTTGCAGAGTTGAACCTCTCAGAGAACAAATTGTCTGGCATGATTCCATCCTCTCTTGGAAACTGTATGAGTTTGGAAGGGCTTCATTTGCAGGGTAACCTTTTTGAGGGGAACATTCCTTCAACTATACAGAATTTGAGAGGTTTACAAGATATAGACCTGTCAAGCAATAACTTGTCTGGGAAGATTCCTGAATTTCTTGGTGAGTTCGAAGTGCTCAAGAATCTCAATCTTTCTTACAATGATTTCGAGGGCAAAGTACCAATGAATGGAATCTTCAAGAATGCAACTTCAATTTCAGTGTATGGAAACAACATGCTCTGCGGTGGTGTCCCAGAGTTAAACTTACTTGCATGTGCTACCCAAAAAGCATCTTCCTTAGGAAAATTTCATGACCCCAAGGTGGTTATCCCTGTGGCTATTGCACTTGTATTTGTATTCTTTCTCTCTTGTTTTCTTACAATCTTTTTGGTCAAAAGAGCAAGAAAGAAATCTTCAAGAGCAACTGTTACAAAGGATTTGGAATTGCAACTTTCTTACTCAGAAATTGAAAAGTGCACTGGTGGGTTCTCCAAGGATAACCTTATTGGCTCAGGAAGTTTTGGTTCTGTATTCAAAGGAACTCTTTCAGGTGATGGATCAACAGTTGCAGTTAAAGTATTAAATCTTCAACAAAGAGGAGCTTCAAAGAGCTTCATTGATGAGTGCAAAGTTCTGAGAAGTATAAGGCATCGCAACCTTCTCAAGATCATAACTGTCATATCAAGTGTTGATCCTCAAGGTAATGACTTCAAAGCTCTAATCTTTGAGTTCATGTCTAACGGAAGTCTAGAAGATTGGTTGCATCCTATAAATAATGTGCAATATCAGAACAAGACATTGTCATTTATCCAAAGGCTCAACATAGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGATATAAAGCCAAGCAATGTTCTTCTTGACAATGATATGGTTGCCCATGTTGGTGACTTCGGATTAGCTACATTTCTGTTTGAAGAATCAAGCAATTTTTCCACACAATCAAGTATTTCAGCTTGTTTAAAGGGTTCTATTGGTTACGTCCCTCCAGAATATGGATTGGGTGGCCATCCTTCTGCAATGGGAGATATATACAGTTATGGGATACTATTACTAGAGATTTTCACAAGAAAAAGTCCAACAGATGAGATGTTTGAAGGTGGCATGGGAATTCAACAGTTTACAACCTTGGCTTTACCAAATCATGCCATGGATGTAATTGATCCTTTATTGCTCTCTGAGCAAGAATTTGATGATACAAATCAACAAGTTTCCACAGAGGAGACTGCAATAGATGAAGTTTTTGCTATAATGGAAAATTGCTTGGTTTCAGTGTTGCAAATTGGAGTTTCATGCTCAGCAACTTCACCAAGTGAACGGGTACCTATGACTGTTGTCGTCAACAAACTGCATGCAATCAAGAACTCGTATTTAAAACTCATCAAGCAAAAATAG 3036 0.3834 MSKFCVNSKRLVFHFLYGFLLLCMSTCQDYAVTATLQGNETDLHALLELKSRVVQDPFNIMSLWNDSIYYCNWVGITCNISNGRVMYLILADKTLTGTVPPSIGNLTFLTRLNLRNNSFHGEFPQEVGHLLYLQHLNISYNYFGGSIPSNLSHCTELSILSAGHNNFTGTIPSWIGNSSSLSLVNLAVNNLHGTIPNEVGKLSSLTLLALNGNYLSGTIPPSIFNISTLFFFTVSQNHLHGTIPADVGFTLPNLETFAGGVNNFTGTIPESLSNASRLEILDFAENFLTGTLPKNIGRLPHLKRLNFDINRLGTGKGGELNFLASLVNCTALEVLGLAQNNFGGELPGSIANLSTQLNILTLGSNAIHGSIPIGIGNLANLTVLGLEENSLSGSVPNTIGMLQKLNDLELNGNNFSGVVPSSMGNLTRLTKLLMEDNNFEGSIPASLGKCQNLLMLNVSHNMLNGTIPRQVIALSSLSIYLDLSHNLLTGSVPVEVGKLVNLAELNLSENKLSGMIPSSLGNCMSLEGLHLQGNLFEGNIPSTIQNLRGLQDIDLSSNNLSGKIPEFLGEFEVLKNLNLSYNDFEGKVPMNGIFKNATSISVYGNNMLCGGVPELNLLACATQKASSLGKFHDPKVVIPVAIALVFVFFLSCFLTIFLVKRARKKSSRATVTKDLELQLSYSEIEKCTGGFSKDNLIGSGSFGSVFKGTLSGDGSTVAVKVLNLQQRGASKSFIDECKVLRSIRHRNLLKIITVISSVDPQGNDFKALIFEFMSNGSLEDWLHPINNVQYQNKTLSFIQRLNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESSNFSTQSSISACLKGSIGYVPPEYGLGGHPSAMGDIYSYGILLLEIFTRKSPTDEMFEGGMGIQQFTTLALPNHAMDVIDPLLLSEQEFDDTNQQVSTEETAIDEVFAIMENCLVSVLQIGVSCSATSPSERVPMTVVVNKLHAIKNSYLKLIKQK 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3243g00001 1011 SUPERFAMILY RNI-like 234 594 - -
Gabi3243g00001 1011 Pfam Protein kinase domain 692 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3243g00001 1011 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 262 999 - -
Gabi3243g00001 1011 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515
Gabi3243g00001 1011 SUPERFAMILY L domain-like 39 312 - -
Gabi3243g00001 1011 SUPERFAMILY Protein kinase-like (PK-like) 671 997 IPR011009 -
Gabi3243g00001 1011 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Gabi3243g00001 1011 FunFam LRR receptor-like serine/threonine-protein kinase EFR 662 772 - -
Gabi3243g00001 1011 Gene3D Transferase(Phosphotransferase) domain 1 773 1010 - -
Gabi3243g00001 1011 Gene3D Ribonuclease Inhibitor 155 247 IPR032675 -
Gabi3243g00001 1011 Gene3D Ribonuclease Inhibitor 248 317 IPR032675 -
Gabi3243g00001 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Gabi3243g00001 1011 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Gabi3243g00001 1011 Gene3D Ribonuclease Inhibitor 41 154 IPR032675 -
Gabi3243g00001 1011 FunFam Leucine-rich repeat receptor-like protein kinase 39 197 - -
Gabi3243g00001 1011 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 220 316 - -
Gabi3243g00001 1011 Gene3D Ribonuclease Inhibitor 318 620 IPR032675 -
Gabi3243g00001 1011 ProSiteProfiles Protein kinase domain profile. 691 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3243g00001 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 773 1010 - -
Gabi3243g00001 1011 SMART serkin_6 691 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3243g00001 1011 SMART LRR_typ_2 426 450 IPR003591 -
Gabi3243g00001 1011 SMART LRR_typ_2 378 401 IPR003591 -
Gabi3243g00001 1011 SMART LRR_typ_2 499 523 IPR003591 -
Gabi3243g00001 1011 SMART LRR_typ_2 402 425 IPR003591 -
Gabi3243g00001 1011 SMART LRR_typ_2 106 130 IPR003591 -
Gabi3243g00001 1011 SMART LRR_typ_2 547 571 IPR003591 -
Gabi3243g00001 1011 SMART LRR_typ_2 202 226 IPR003591 -
Gabi3243g00001 1011 FunFam LRR receptor-like serine/threonine-protein kinase EFR 318 626 - -
Gabi3243g00001 1011 Gene3D Phosphorylase Kinase; domain 1 671 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3243g00001 Gabi-Chr3243 2013 5741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3243g00001 39 1006 Receptor kinase-like Gene Family AT3G47570 45.264 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi3243g00001 Pkinase 3.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3243g00001 - - gmx:100785230 1607.42