Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3239g00031 ATGAGGGAAGATGATTCGAATTGGTTTTCAAGATGGGAAGAGGAACTACCTCGCCAAGATGAACTCATGCCCTTATCACAAACCCTAATCACCCCTGATCTAGCCGTGGCCTTCGACATCAGAAACCCACAACAACAACAACAACAGCAACAACCACTACCACCACCTCCTTCCAACCCTTCTTCTCTCCCTTCCCCAACCAACCCCACACAACCCACCTCCGCCGAGTTCGCCGATTCCGGCGAACTCGGCTCCGGCACCGCCGGCGAGGAACCCGCCCGCACCCTCAAGAGGCCACGCCTCGTGTGGACCCCACAGCTCCACAAGCGCTTCGTCGACGCCGTGGCGCACCTTGGGATCAAGAACGCCGTGCCCAAGACCATAATGCAGCTCATGAGTGTTGACGGTTTAACCAGAGAAAACGTCGCCAGCCATTTGCAAAAGTATCGCCTTTACCTCAAACGCATGCAGGGGATTTCCTCCGCCGGAGCCGGCGGCGCCGGCGGTGGAGGTGGCGGTGCAGCCGTCGCCGACCCCGCCACGGACCACTTGTTTGCGAGCTCCCCCGTGCCGCCGCATTTCTTGCACCCGGCGGCACGGGCTAATTCCGAGCATTTCATGCCGTTTGTGCCTGTCCCCGCCCTCCAGCACCACCACCACCACCAACAGCAGCAGCAGTTGGCGGCGGCGCAGTATCACCGGCAGGTGGGGCATTTTGGGTCGCCGCCGAATGGTCACTTTGAGAATCCCTTCCTTTCTAGGCAGTCTCAGCAGCAGCAGCTTCATAGGATTGGGGCACCTGTGCACAACCCTGTACCTGGTTATGTAGAGGACATGGAATCAGCTAACGCAGCATCAGGAGGGAGAAAGGTTCTTACTTTGTTTCCAACCGGAGATGATTGA 903 0.5836 MREDDSNWFSRWEEELPRQDELMPLSQTLITPDLAVAFDIRNPQQQQQQQQPLPPPPSNPSSLPSPTNPTQPTSAEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSAGAGGAGGGGGGAAVADPATDHLFASSPVPPHFLHPAARANSEHFMPFVPVPALQHHHHHQQQQQLAAAQYHRQVGHFGSPPNGHFENPFLSRQSQQQQLHRIGAPVHNPVPGYVEDMESANAASGGRKVLTLFPTGDD 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3239g00031 300 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3239g00031 300 MobiDBLite consensus disorder prediction 1 97 - -
Gabi3239g00031 300 FunFam Two-component response regulator 94 157 - -
Gabi3239g00031 300 MobiDBLite consensus disorder prediction 49 67 - -
Gabi3239g00031 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 151 IPR006447 GO:0003677
Gabi3239g00031 300 Gene3D - 95 157 - -
Gabi3239g00031 300 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 260 IPR044841 GO:0003700|GO:0006355
Gabi3239g00031 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 154 IPR017930 -
Gabi3239g00031 300 SUPERFAMILY Homeodomain-like 95 155 IPR009057 -
Gabi3239g00031 300 Pfam Myb-like DNA-binding domain 102 150 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3239g00031 Gabi-Chr3239 444524 446967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3239g00031 1 300 G2-like Transcription Factor Family AT3G10760 57.349 1.26e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3239g00031 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3239g00031 - - ccaj:109802866 413.305