Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3239g00030 ATGCCTTCGAGTTCAAAGCAAAAGAAGCAATCGAAGAAGGTATCATTGTCGAATCCCGAAACCACTGCATCCAACAATAATACACCTTCTTCTGAAACCCGCCAACCCGAACAACAACTTGCTTCTCTCTGCGAAGAAGCTTCCAGAAAGTTCCCATCTTTCATTGGAAAATCAGCGTTCGTCGGCGAAATCAGCGATGTTGAGATTACCCCTTTTCCAAAGGGCTGTAAAATTTGGCTTTCCGAGCCTTCCATGGTTGCCTCTTCTATTGCTCCGGGTTACATTGTCTCGGTGTCTATTCCTTCTTCAAGGAACAAAAAAAGTGCACAATTGCATAGCTTTCCTCTCAAATCATTAGCTAGTGAATGTGCCAAGTGCTACGGATTGGAAATCGGTAAGACATCATCTGATGATGATGATAGTGCAGGAAACTACTTTGCGCTTGCAACGGTTTTTCCTTCTAGTAAGGTTTTGAAGAATGGAGTACGTCTGTCTTCAAATCTTTCTTATACCATGGGATGTCCTCCTTCAGGCACAAGTGTGTTTGTTCACCCAGTACAGAAACAGTCCTTATCTTGTCTCGAAAATGGTTGCAATGAACTGCATTCTGCGGAAAATCATTGTCTGTTGATATCTAATTGCAAGGAATTGTATCTTCGGTTGGCTCCTTGTCCAAATGGACTACCGTTGAAAATTAATAACTTACCCTCATTGGCCTTGTCTAAGGAGAAATCCCATGTCCAATCCGAGAATGATATTTTTGCATCTCCTAGAACACCTTCTTATGGATCAAAGTTTTCTAATGCTAGTGGCTTGTCTTCTCCAGTATTTGAAGATTCATCATCAAGTGTACCCAATCAGAATAGTCAATCAGTGGCTTCATGTGATGTTAGTGAGGCATTAGGGGATGAAAGTGCCAAAAAACTACTACAGACATCTGCAACTTCATGGTTATATTCTCGTCGTTTACTGCTAGGGAATCTTGTCATTGTGCCAATCCCAATGCTTTCAGAGTTGTGCATTTTCCAAGTGGCAGGAGTTAAAAAGGTGCCAGTTACCAGATCTGATCATTATCCATCGAACGGAAGCAGTAATTTATATCCTGAGGATTCTGATATAGCAGAGAATGTAAATCAGGCTTTCATTGTCAATTATGAAACGAAGGTATTTTTATCACTGCCATCAAATGCAGCATCTGATGAGCCAGTTCAAAGGGATTTATCTTGTGTGAAACTTAAACACAAGGTTGCTAATGCAAGCATACGCGATAATATTTCTAAATTGGGTGGTCTATCTAAAGAATATACACTTTTAAAGGGTATAATTTCTTCCTCAGTAAAATATGATTTATCAAGTTTTGGTTTACGACCTACAAGAGGAATCCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGATGCTGGGGTCAATTTTTTCCCGATAGATGGACCTGAAATTGTAACCCAATATTATGGGGAAAGTGAGCAAGCATTGCATGAAGTTTTTGATTCAGCCATTCAAGCTGCACCTTCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGAAGGAGGTGAAGAGCTATCTCAAAGATTGGTTGGGAGCTTATTGAATCTGATGGATGGAATTAGTAGAACTGAAGGGTTTCTTGTAATTGCTGCCACTAACAGGCCTGACCATCTTGAGCCAGCTCTCAGACGACCTGGAAGGTTTGACAAGGAAATTGAAATTGGTGTGCCATCACCCAAACAACGATTGGATATTTTGCTCACTCTTCTCTCTGAAGTGGATCACTCTCTCTCAGACTTACAAATTGAAAACCTTGCCACAGTCACTCATGGTTTTGTGGGTGCAGATCTTGCTGCCCTTTGCAATGAGGCAGCCTTGATTTGTCTACGACATTATGCTAACTATAAAAAAGCTTATGATGCTTGTTCTGATAACATAACAGAGCAACCTGCTCTGATGAATGGTGCAACAAACTCGAGAGATCATTCAGGTGTTGCAACTTCATCTTTTTCTGATATCTCAACGGTTTCCAGTCTTGTATTACCTTCCTGCATGATGGAAACAACTTCTGAAAATATGGAAATAATTCCTGATAGTGGTGAAGAAGAGCATATTTTGAAAGTAAGTTTTGAAGATTTTCAGAAGGCTAAGATGAAAATAAGACCCAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGCGGCCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTGGAATGGCCGCAGAAGTACCGTGATGCATTTGACCGTATTGGGGCTTGCCCTCCAACAGGAATACTGATGTTTGGGCCTCCAGGTTGTAGCAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGCTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCTGTCAGATCGTTGTTTGCAAAAGCAAGGGCCAATGCTCCATCAATCATATTTTTTGATGAAATAGATAGTCTTGCTGTAACTCGTGGGAAGGAAGGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAATTGGATGGTCTGCATCAAAGAGTTGATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAAATTGACCCTGCCCTATTAAGACCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGATGGACAGAGAAGAGATATTTCGCATTCATTTACGGAAAATTCCATGTGGTTCTGATGTTAGCATTGAAGAGCTCGCTCGACTCACAGATGGTTGTACTGGGGCTGACATATCACAAATATGTCGCGAGGCAGCTATCGCAGCGATTGAGGAGAGCCTTGATGCTTCAGTTATAACAACAAAGCATTTAAAGATGGCAATCGAACAGGTCCAGCCATCAGAAGTGCAGTCTTACCAAAAGCTGTCAGCAACGTTTCAAAGGGCTGTTCACTGCTGTGATATAAAAGATGAAATCAATCCTATGCAGTGCAACAGTGGTTCTACTTTGTTCAACATTTGA 3114 0.4181 MPSSSKQKKQSKKVSLSNPETTASNNNTPSSETRQPEQQLASLCEEASRKFPSFIGKSAFVGEISDVEITPFPKGCKIWLSEPSMVASSIAPGYIVSVSIPSSRNKKSAQLHSFPLKSLASECAKCYGLEIGKTSSDDDDSAGNYFALATVFPSSKVLKNGVRLSSNLSYTMGCPPSGTSVFVHPVQKQSLSCLENGCNELHSAENHCLLISNCKELYLRLAPCPNGLPLKINNLPSLALSKEKSHVQSENDIFASPRTPSYGSKFSNASGLSSPVFEDSSSSVPNQNSQSVASCDVSEALGDESAKKLLQTSATSWLYSRRLLLGNLVIVPIPMLSELCIFQVAGVKKVPVTRSDHYPSNGSSNLYPEDSDIAENVNQAFIVNYETKVFLSLPSNAASDEPVQRDLSCVKLKHKVANASIRDNISKLGGLSKEYTLLKGIISSSVKYDLSSFGLRPTRGILLHGPPGTGKTSLAQLCAHDAGVNFFPIDGPEIVTQYYGESEQALHEVFDSAIQAAPSVVFIDELDAIAPARKEGGEELSQRLVGSLLNLMDGISRTEGFLVIAATNRPDHLEPALRRPGRFDKEIEIGVPSPKQRLDILLTLLSEVDHSLSDLQIENLATVTHGFVGADLAALCNEAALICLRHYANYKKAYDACSDNITEQPALMNGATNSRDHSGVATSSFSDISTVSSLVLPSCMMETTSENMEIIPDSGEEEHILKVSFEDFQKAKMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKYRDAFDRIGACPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLAVTRGKEGDGVSVSDRVMSQLLVELDGLHQRVDVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEMDREEIFRIHLRKIPCGSDVSIEELARLTDGCTGADISQICREAAIAAIEESLDASVITTKHLKMAIEQVQPSEVQSYQKLSATFQRAVHCCDIKDEINPMQCNSGSTLFNI 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3239g00030 1037 PANTHER AAA-FAMILY ATPASE 150 1011 - -
Gabi3239g00030 1037 ProSitePatterns AAA-protein family signature. 892 910 IPR003960 GO:0005524|GO:0016887
Gabi3239g00030 1037 FunFam spermatogenesis-associated protein 5-like protein 1 923 1005 - -
Gabi3239g00030 1037 Pfam AAA+ lid domain 944 989 IPR041569 -
Gabi3239g00030 1037 Pfam AAA+ lid domain 614 646 IPR041569 -
Gabi3239g00030 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 748 1003 IPR027417 -
Gabi3239g00030 1037 Gene3D - 923 996 - -
Gabi3239g00030 1037 SMART AAA_5 457 593 IPR003593 GO:0016887
Gabi3239g00030 1037 SMART AAA_5 786 924 IPR003593 GO:0016887
Gabi3239g00030 1037 Gene3D - 592 750 - -
Gabi3239g00030 1037 MobiDBLite consensus disorder prediction 1 41 - -
Gabi3239g00030 1037 FunFam Calmodulin-interacting protein 111 592 750 - -
Gabi3239g00030 1037 CDD RecA-like_CDC48_NLV2_r1-like 427 589 - -
Gabi3239g00030 1037 FunFam Putative vesicular transport protein (CDC48) 412 590 - -
Gabi3239g00030 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 650 IPR027417 -
Gabi3239g00030 1037 Gene3D - 751 997 IPR027417 -
Gabi3239g00030 1037 Gene3D - 408 590 IPR027417 -
Gabi3239g00030 1037 Pfam ATPase family associated with various cellular activities (AAA) 461 590 IPR003959 GO:0005524|GO:0016887
Gabi3239g00030 1037 Pfam ATPase family associated with various cellular activities (AAA) 790 921 IPR003959 GO:0005524|GO:0016887
Gabi3239g00030 1037 CDD RecA-like_CDC48_r2-like 761 920 - -
Gabi3239g00030 1037 FunFam calmodulin-interacting protein 111 isoform X1 747 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3239g00030 Gabi-Chr3239 424373 435781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3239g00030 1 1015 Calmodulin-binding Proteins AT3G56690 57.047 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3239g00030 - - gmx:100788600 1575.07