Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3239g00028 ATGGCTTCAAGACCCATCGTTCCACAACATGCCAGAGGAGGTGAGGCTAACGTTGGAGGAGGAAAGCAACATAAGAAGAACGTTGCAGCAGATGGAAGGAACCGAAAAGCACTTGGCGATATTGGAAATTTGGTCACTGTGAGAGGACTTGAGGACAAGCCCAATCGCCCCATCACAAGGAGTTTCCGTGCCCAACTACTTGCAAATGCACAAGATGCAGCAGTTGCTGAGAATAACAGGAAGCAGGCTTGTGCTAATGTAGCTGGACCTCCTCCTCCTGCGGTTGCTGATGGAGTTGTTGCAATGGCTAAAAGAGTAGCCCCAAAACCGGCTCAGAAGAAAGTCACTGCAAAACCAAAGCCTGAGGAAGTCATTGAAATAAGCTCAGAAAAAAAGGTCCAGAAAGACAAGTCTGTGACCAAGAAAAAGGAAGGAGATCCCAACTCCAAGAAGAAATCACAAGCTTTTACTTCTGTGCTCACTGCTCGAAGCAAGGCAGCTTGCGGTTTGACAAACAAACCGAAGGTGGAGATTGAAGACATTGATGCTAGTGATGCTGACAATGAACTTGCTGCAGTCGAGTATGTTGAAGACATCTACACCTTCTATAAGGAAGTTGAGAACGAGAGCCGTCACCTCGACTATATGAACACACAGCACCAACCGGAGTTAAATAAAAGGATGAGAGAAATACTGCTTGATTGGCTGATGGATGTGCACTCCAAGTTTGACCTTTCACTTGAAACCCTTTATCTTACCATCAATATAATCGATCGGTTCCTATCAGTTAAGGCTGTGCCAAAGAGGGAATTGCAATTGGTTGGTGTCAGTGCTATGCTGATGGCAGCCAAGTATGAAGAAATCTGGCCCCCTGAGGTTAATGACTTTGTCTGCCTTTCAGACAGAGCTTACTCTCATGAACAGGTACTGGCTATGGAGAAAATCATACTTGGCAAGCTGGAATGGACTTTGACTGTGCCTACCCCTTTTGTTTTCCTTGTTCGTTTTATCAAGGCATCAAATCCTGATCACACGTTGGAAAACATGGCTCATTTTCTCTCTGAGTTGGGGGTGATGCATTATGCTACCTTAGTTAAGTACTGCCCATCAATGGTTGCTGCCTCAGCAGTCTTTGCAGCAAGATGCACTCTGAACAAGAGCCCCATTTGGAATGAGACACTTAAGCTGCACACTGGTTACTCAGAAGAAGAACTTATGGACTGTGCTAAACTATTGGTGAACTTTCACTCCACTGTTGGGAATGGAAAGCATAAGGCTGTGTGCAGAAAGTACTCTGATCCTGGGAGAGGAGCTGTTGCAGTGCTTCCACCTGCTAAAATTCTTCTGCCTGAAAGTTCTATCTCAATTTGCCCAGAACATTTTTAG 1386 0.4531 MASRPIVPQHARGGEANVGGGKQHKKNVAADGRNRKALGDIGNLVTVRGLEDKPNRPITRSFRAQLLANAQDAAVAENNRKQACANVAGPPPPAVADGVVAMAKRVAPKPAQKKVTAKPKPEEVIEISSEKKVQKDKSVTKKKEGDPNSKKKSQAFTSVLTARSKAACGLTNKPKVEIEDIDASDADNELAAVEYVEDIYTFYKEVENESRHLDYMNTQHQPELNKRMREILLDWLMDVHSKFDLSLETLYLTINIIDRFLSVKAVPKRELQLVGVSAMLMAAKYEEIWPPEVNDFVCLSDRAYSHEQVLAMEKIILGKLEWTLTVPTPFVFLVRFIKASNPDHTLENMAHFLSELGVMHYATLVKYCPSMVAASAVFAARCTLNKSPIWNETLKLHTGYSEEELMDCAKLLVNFHSTVGNGKHKAVCRKYSDPGRGAVAVLPPAKILLPESSISICPEHF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3239g00028 461 CDD CYCLIN_AtCycB-like_rpt2 327 444 - -
Gabi3239g00028 461 CDD CYCLIN_AtCycB-like_rpt1 178 322 - -
Gabi3239g00028 461 ProSitePatterns Cyclins signature. 229 260 IPR006671 -
Gabi3239g00028 461 Gene3D - 198 440 - -
Gabi3239g00028 461 Gene3D - 212 325 - -
Gabi3239g00028 461 SMART Cyclin_C_2 327 445 IPR004367 -
Gabi3239g00028 461 FunFam G2/mitotic-specific cyclin 211 320 - -
Gabi3239g00028 461 Pfam Cyclin, N-terminal domain 198 324 IPR006671 -
Gabi3239g00028 461 MobiDBLite consensus disorder prediction 1 34 - -
Gabi3239g00028 461 Pfam Cyclin, C-terminal domain 327 444 IPR004367 -
Gabi3239g00028 461 SUPERFAMILY Cyclin-like 326 446 IPR036915 -
Gabi3239g00028 461 FunFam G2/mitotic-specific cyclin-1 321 440 - -
Gabi3239g00028 461 SUPERFAMILY Cyclin-like 187 324 IPR036915 -
Gabi3239g00028 461 PANTHER CYCLINS 144 433 IPR039361 -
Gabi3239g00028 461 MobiDBLite consensus disorder prediction 129 150 - -
Gabi3239g00028 461 MobiDBLite consensus disorder prediction 129 156 - -
Gabi3239g00028 461 PIRSF Cyclin_A_B_D_E 1 456 IPR046965 GO:0016538|GO:0044772
Gabi3239g00028 461 SMART cyclin_7 331 414 IPR013763 -
Gabi3239g00028 461 SMART cyclin_7 234 318 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3239g00028 Gabi-Chr3239 420848 423400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3239g00028 1 449 Core Cell Cycle Gene Families AT4G37490 52.790 4.04e-143 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3239g00028 K21777 - gmx:547919 662.144