Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3238g00044 ATGGCAAAAGAGCAAAAGCAGGGCAAAGACAAACAGAAGGAATTGGAACTCGAAATCGATGAGGCTGAGGCTGACATTGATGTCCCATTGCCTCTCACCGTGAATTCTCGGGTTTTGTATATGTTGGGAGATATTGCTGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCCAATTGGTTCGTAAACGCACTATCAAGTATCGCTCCTCTGGCTTCCCTCACCGCACTTCCAGCACCACCATGCCTTCAAGTTCTAGCATCAGAGAATCGATTGAGGATCCAAAATGTGAGCTGGTCCCTGATCAAACAGAAATTAGCTTGTGGGAGAGGCTTGGGAAAGCTGCAATGTTGGACATTGAATCAAGCTCCTTTTCTTGGGACATGCTTTCTTCGCTGCACCACACTGAACACAGCAGTAGCAATGAACATTCTGAGGATGAAATGAACAAGGCTCTTGAGGTAACTGTAAATTCAGGAGGGGTTGTCTTCTTTGCATTCTTCAATTGCCTTGGGAGTGCTGATGCTTTTCCAAAAGAAGAAGCAGCCGTTATAAAGATAGCATCATCAAGAATGGCAACACAGTCCGAACGCCTTGGCTATGAATTTGCCAAGTGGTTGGGAGTCCAATCTCCACAGGCTAGAGTCATTCACAATACCAGTTTAGAATGGCAACAAATAAAGGAAGCTGCAGAAAAAGCTAGAGAAGCAGCAAATTCTGAGGGTGATGAAATTGGTGAAGTGACATGTTTTGAACTTTTGGAAGCACTTGAGCTTAGCCGATGTCTCTTTTTTATGAGTTACGTACATGGTTCACCTTTGCTTGAAAACTCTAGTGCATTTGAGTCAGGCGAATCTGCAGACAGAACATCAGAAGCTCTTGGCAGGGTACTGATGCTGGACCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGTGAGCTTAGATGGCGTGGGAATTCTGCAAATTTATTGTTGGCTGAAAAGATGATCTCTGCGAATACAAACACACTAGAAGCAGCTCTTGATTCTGCAATTAATCGATATAGACCGAAGGTGATTAGGGCACTTCAAAAAGAAAGAAGGTCAACTTCAGTAGATAGCAGACTCGATTCTCGTAATCCTGGCTTGATATCACAGGCCTCTGATCTTTCAGAGATCGCAGAATCACCAAGATCTTGTGCCATAAGCCTTAAAAGTCAAACATCAGGAGAATCACTGTCTCCTGACTTTCATATTGTAGCCATTGATTCTGGTGTTCCTCGGCGACCCCCTGCTGGAAAACGTGCAAATGATCAGGTTAATTATCCTAAGTTGGTTGAGTTGTTGATCAATAGTTCTGAGTTTGCCTCAAACCTGTTATATGATATAACTGGAGGGAAATTAGGATGTCCTTCACCAGAAGACATGGATACAACTGATGTACATGCAAGTGACATGACATCAGTAGTTCATGCGTTCCGTACTGGTTTCCGTGCTTCTATTAGGGATCTGCAAGGATTCCATATATTCCTACTCACACTTCACCAAAGACTTGACAGTTTGTTACGATCATTTATGAACATTATAAGCAAAATATCTTCGGGGGAATCCGACAAAGAGGATTCAGTGGTTCCTGACTCACCTTCACAGACTGCTGGTGTTAGTTGTTCCTCTCCAACAAGTAAGGAGAGGCTTGCTAATGATAACCATCAAGATTTTACTGATTCAGAATCACAGAGAACTGTTTCAAGGGCATCGTCGTTATGCAATAGAGATTGCTGTGATTCGGCTCCTATGTCAAGAGAAGGTTGGCATGGAAAATTCTACAAAGGAAGTGGGGAGCCACTTCGTTGTCTCCGCTTGACAGCTAAACTCCGTGACTTCCAAAAATTTGCCAAGGTTGATGCTGAATCTAATAAAGAATTGGAGCAGTGGAATGAAATGCTTAAAAGTGATGCCATGAAGCTATGCCAGGAGAACAATTTCAATACAGGATTTTTCGAGGGTAGTGATAATAACAGTGTAGTTGATGCATACGAACTTAAGGTCAGACTTGAGCATATCCTCGAGAGAATTGCATTGATATCTGAGGCTGCAAGTACAGAGAGACCATCCGCTGTTACAAGTAGTCTGTTCATTGGGGGAGCACTTGCTGCAAGATCTGTATACACACTCCAATACTTGGGAATCACACATATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCTGAATGTCAACTTCCTGATCTGTTCGAGTACAAAAATTTCTCTGTGTGTGACAGTGAAGATTTTAACATCAGCACCATATTTGAAGAAGCGTGTGATTTTATAGATTATGTTGAACAAACAGGTCAGAGAGTTTTAGTTCATTGCTTTGAGGGGAGAAGCAGAAGTGTCACGTTGGTCCTTGCTTACTTAATGCTCAGGAAGAAGTTCACATTATCAAAAGCATGGCATGCTCTGAAACGAGTTCACCGTCGAGCACAGCCCAATGATGGTTTTGCAAGGCTCTTACTGGAATTGGATCAGAAACTGCATGGGAAGGTTTCAATGGAATGGCAACAGCGGAAACCAACAATGAAAGTCTGCCCCATTTGTGGGAAGAATGCTGGACTAAGCAGCAGCTCACTTAAGCTACATCTGCAGAAATCACATAGAAAGCTATCATCTGGGAGCGTAGATAGTGCCATGACAATGGAGATCCAGAAGGCAATTACTGCTTTGAAGATTAGCCGTGGTGGGAGTGTCAGCCCCACACAAAGGTCCTCTCATTCAATAATTGATCAATAG 2772 0.4315 MAKEQKQGKDKQKELELEIDEAEADIDVPLPLTVNSRVLYMLGDIAAGPAFRFTQWLQLVRKRTIKYRSSGFPHRTSSTTMPSSSSIRESIEDPKCELVPDQTEISLWERLGKAAMLDIESSSFSWDMLSSLHHTEHSSSNEHSEDEMNKALEVTVNSGGVVFFAFFNCLGSADAFPKEEAAVIKIASSRMATQSERLGYEFAKWLGVQSPQARVIHNTSLEWQQIKEAAEKAREAANSEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLENSSAFESGESADRTSEALGRVLMLDLVIRNEDRLPCRELRWRGNSANLLLAEKMISANTNTLEAALDSAINRYRPKVIRALQKERRSTSVDSRLDSRNPGLISQASDLSEIAESPRSCAISLKSQTSGESLSPDFHIVAIDSGVPRRPPAGKRANDQVNYPKLVELLINSSEFASNLLYDITGGKLGCPSPEDMDTTDVHASDMTSVVHAFRTGFRASIRDLQGFHIFLLTLHQRLDSLLRSFMNIISKISSGESDKEDSVVPDSPSQTAGVSCSSPTSKERLANDNHQDFTDSESQRTVSRASSLCNRDCCDSAPMSREGWHGKFYKGSGEPLRCLRLTAKLRDFQKFAKVDAESNKELEQWNEMLKSDAMKLCQENNFNTGFFEGSDNNSVVDAYELKVRLEHILERIALISEAASTERPSAVTSSLFIGGALAARSVYTLQYLGITHILCLCTNEIGQSECQLPDLFEYKNFSVCDSEDFNISTIFEEACDFIDYVEQTGQRVLVHCFEGRSRSVTLVLAYLMLRKKFTLSKAWHALKRVHRRAQPNDGFARLLLELDQKLHGKVSMEWQQRKPTMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKAITALKISRGGSVSPTQRSSHSIIDQ 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3238g00044 923 Pfam Dual specificity phosphatase, catalytic domain 711 837 IPR000340 GO:0008138|GO:0016311
Gabi3238g00044 923 Coils Coil 5 25 - -
Gabi3238g00044 923 CDD DSP 697 834 - -
Gabi3238g00044 923 MobiDBLite consensus disorder prediction 71 91 - -
Gabi3238g00044 923 SMART dsp_5 696 838 IPR020422 GO:0006470|GO:0008138
Gabi3238g00044 923 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 765 817 IPR000387 GO:0016311|GO:0016791
Gabi3238g00044 923 MobiDBLite consensus disorder prediction 537 557 - -
Gabi3238g00044 923 Gene3D - 272 523 IPR036940 -
Gabi3238g00044 923 SUPERFAMILY Protein kinase-like (PK-like) 56 432 IPR011009 -
Gabi3238g00044 923 MobiDBLite consensus disorder prediction 529 572 - -
Gabi3238g00044 923 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 696 841 IPR029021 -
Gabi3238g00044 923 Pfam Actin-fragmin kinase, catalytic 104 418 IPR015275 -
Gabi3238g00044 923 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 10 922 IPR035010 GO:0004721|GO:0009737|GO:0043622
Gabi3238g00044 923 ProSiteProfiles Dual specificity protein phosphatase domain profile. 696 841 IPR020422 GO:0006470|GO:0008138
Gabi3238g00044 923 MobiDBLite consensus disorder prediction 71 89 - -
Gabi3238g00044 923 FunFam Dual specificity protein phosphatase PHS1 668 842 - -
Gabi3238g00044 923 Gene3D Protein tyrosine phosphatase superfamily 679 851 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3238g00044 Gabi-Chr3238 464224 472208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3238g00044 7 907 Protein tyrosine phosphatase (PTP) family AT5G23720 65.787 0.0 1162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3238g00044 K14165 - gmx:100791993 1502.65