Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3238g00042 ATGATGTATGGAGCAAATGGCGTTGCTTGGGTACAAGACAGAGAAGAACAAGACTCGGTTTCAGCTTCATTTGCTACAAACTCAAACCCCAACATCAACACTGACGAATTGAGCTGTGTGTCAGCGTGTGCTTTCAAACCCATGCTTGAGTTCAATGAAGAATGGTGCGTGGCCAATAACAATACCCAAAATCACCCATATATTAAAGACAACAATATGGCCTTCTCTTCCAACTTTGCTGCTGACTCAGATAATCTTAATCTATTGCTCCCCACATTGGATTCTTCCTCTTCCACTCTGTTCAGCAACTTTTCTTCTCTTCTTAGTACCATGATCCCTACCACGCATGGCTTTGACATGGGTTGCGAGGTTGGGTTTCTAGACCCTCAATCTTCTACTACTACTACTACTACTACTGTTACTACTTCCAAAGTTATGAACCAAGGTGCTGGCTTCTCGTGTGCCTTCAGTAACTTAAGCTCAAATAACCATTTAATGCCACAAAACAGTGTTGGTTTTTCTGGTTTCAACAACTTTGAGGAGGGTTCTTCTGGAAAGATACTGAGACCCCTCGAATCGTTGCCTCCATCGGGTGCAAGGCCAACTCTTTTTCAGAAGAGAGCAGCATTTCGTAAAAACTTGACAGAGGAAAGGAATGATAAGAAAAGGAAGAGGAGTTATGGAGAAGATGTAGAAGATGGAAGTTTTGATGGTTCGGGATTAAATTATGATTCTGATGAGATGAATAATGATGAAAGTGATAACAATAAGAATATTGGTGGAAACAGCACAATCACAGGAGGGGATCAGAAAGGGAAGAAGAAGGGAATACCAGCTAAGAATTTAATGGCCGAACGCCGCAGAAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGATCCATTGTTCCAAATATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTATTTGAAGGAACTTATGCAGAGGATCAGTGACCTTCACAACGAATTGGAGTCAACACCAGCTGGCTCTTCAGTGACACCAGCTTCGAGCTTGCATCCTTTGACACCAACTACTCTATCTACGCTACCAGGTCGTATGAAAGAAGAACTTTACACAAGCTCATTGCCAAGCCCAAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGGGAAGGAAGAGCTGTGGACATCCACATGTTTTGTAGCCGCAAACCGGGTTTGTTGCTGTCAACGATGAGGGCTTTGGATAACCTTGGGTTAGAGATCCAGCAGGCTGTTATCAGCTATTTCAATGGATTTGCTATGGATATTTTTCGAGCTGAGCAATGCAAAGAAGGTCAGGATATCTATCCGGAGCAAATCAAAGCAGTACTATTGGATTCAGCTGGCTTCCATAACATGACCTAG 1407 0.4328 MMYGANGVAWVQDREEQDSVSASFATNSNPNINTDELSCVSACAFKPMLEFNEEWCVANNNTQNHPYIKDNNMAFSSNFAADSDNLNLLLPTLDSSSSTLFSNFSSLLSTMIPTTHGFDMGCEVGFLDPQSSTTTTTTTVTTSKVMNQGAGFSCAFSNLSSNNHLMPQNSVGFSGFNNFEEGSSGKILRPLESLPPSGARPTLFQKRAAFRKNLTEERNDKKRKRSYGEDVEDGSFDGSGLNYDSDEMNNDESDNNKNIGGNSTITGGDQKGKKKGIPAKNLMAERRRRKKLNDRLYMLRSIVPNISKMDRASILGDAIEYLKELMQRISDLHNELESTPAGSSVTPASSLHPLTPTTLSTLPGRMKEELYTSSLPSPNGQPARVEVRLREGRAVDIHMFCSRKPGLLLSTMRALDNLGLEIQQAVISYFNGFAMDIFRAEQCKEGQDIYPEQIKAVLLDSAGFHNMT 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3238g00042 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 343 IPR036638 GO:0046983
Gabi3238g00042 468 FunFam BHLH transcription factor 272 340 - -
Gabi3238g00042 468 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 103 466 - -
Gabi3238g00042 468 CDD ACT_UUR-ACR-like 397 457 - -
Gabi3238g00042 468 MobiDBLite consensus disorder prediction 337 359 - -
Gabi3238g00042 468 CDD bHLH_AtAMS_like 279 344 - -
Gabi3238g00042 468 Pfam Helix-loop-helix DNA-binding domain 283 325 IPR011598 GO:0046983
Gabi3238g00042 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 325 IPR011598 GO:0046983
Gabi3238g00042 468 SMART finulus 282 331 IPR011598 GO:0046983
Gabi3238g00042 468 MobiDBLite consensus disorder prediction 254 269 - -
Gabi3238g00042 468 MobiDBLite consensus disorder prediction 211 276 - -
Gabi3238g00042 468 MobiDBLite consensus disorder prediction 211 232 - -
Gabi3238g00042 468 Gene3D - 270 340 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3238g00042 Gabi-Chr3238 444258 447222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3238g00042 109 441 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.556 2.35e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3238g00042 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3238g00042 - - qsu:111990212 480.715