Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3238g00041 ATGGCATCATCAGAGGTATCGATTAAGGGGAATTCCGTGAACGGAAAAGGAGAAAGCTATTCTTGTGTTTATAACAACAACAACAACAACAACAACGATGCGGCAGAGGGTCAAGATGCTTCTGCATCTTCAGCTGCGAGAGACGCGGAAGTTGCACTTTACAGGGAGCTATGGCATGCGTGTGCGGGTCCCCTTGTGACGGTGCCAAGAGAAGGAGAGCTCGTGTTCTATTTTCCTCAGGGGCATATTGAGCAGGTGGAGGCATCGACGAATCAGTTAGCGGAGCAGCATATGCCCGTATACAATCTCCCACCTAAGATCCTTTGTCGGGTCATCAACGTGATGCTGAAGGCGGAGCCTGATACCGATGAGGTGTTTGCTCAAGTGACTTTACTTCCAGAGCCAAATCAAGATGAGAATGCTGTGGGAAAAGTGCCTCCGCTGGCTCCTCCCCCACGATTTAATGTTCATTCTTTTTGCAAAACACTGACTGCGTCAGATACTAGTACCCATGGTGGGTTTTCAGTGTTGAGACGACATGCGGATGAATGCCTTCCTCCACTGGACATGTCAAAGCAGCCACCTACCCAGGAATTGGCGGCCAAGGATCTGCATGGTACTGAGTGGCGATTCCGGCATATATTTCGCGGTCAACCACGTAGACACTTGCTGCAAAGCGGTTGGAGCATTTTTGTCAGCTCCAAGAGGCTTGTTGCTGGGGATGCATTTATATTTATAAGAGGTGAGAATGGGGAACTTCGAGTTGGTGTCAGGCGTGCAATGAGACAGCAGGGTAATGTTCCATCATCGGTTATCTCAAGCCACAGCATGCATCTTGGTGTCCTTGCAACTGCTTGGCATGCCATCATGACCGGGACCATGTTCACTGTTTATTATAAGCCCAGGACCAGTCCAGCTGAATTTATCGTTCCTTATGATCAATACATGGAGTCTCTAAAAACTAATTATACCATAGGGATGCGATTCAAAATGAGGTTCGAAGGTGAAGAGGCCCCTGAGCAAAGGTTTACTGGTACCATTATCGGAATGGAAGATGCTGACTCCAAAAGGTGGCCAAAATCCAATTGGAGAAGTCTCAAGGTTAGATGGGATGAAACATCTAACATACCTCGACCCGAGAGAGTTTCCCCTTGGAAAATAGAGCCAGCTCTTGCTCCCCCTGCTCTAAATCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGGGCTAATGCAGTCCCATCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGTATCATCTAAAGTAAGCATAGACCCTTTGCCAACAAGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGGAAATTTTGCAGAAGGCAACGAGTCTGATACTGGAGAGAAATCTGTTGTGTGGCCACCTGCAACAGATGATGAAAAGATAGATGTTTCTATTTCAAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGGGAGGCATGAGCCTACATATTCTGATCTCCTCTCAGGCTTTGGGGGCCATGGAGATCATTCTTCCCATCCATCCTTTGTTGATCAAAGTGGTCCTGTAGCTAACCCTGGTAGGAAACATTTGTTGGATCGTGATGGAAAACTTAATGTACTAGGTAGTCCGTGGCCTGTAATGCCACCTAGCCTACCACTCAATCTTTTGGACTCCAATATAAAAGGTTCTGCACAAGGCAGTGATACAACCTATCAAGTTCGAGGGAATTTGAGGTATAGTGCATTTGGTGAATACCCTGTGCTTCATGGACATAAAGTTGGGCAACCACTTGGAAACTTGTTGATGCCACCACCGCCCCCAACCCAATATGAGAGTCCTCATTCAAGGGAACTGTTGCCCAAACCAATATCAGCAAAAACTTGTGAGGTTGCAAAACCAAAAGATGGTGACTGTAAGATATTCGGCATCTCACTTCTTAGTTGCCCCATTGCACCAGAGATATCACACAGAAATGTTGCAAGTGAACCAGTTGGTCACATGCATCGTACATCACACCAACATCGAACATTTGAAAATGATCAGAAGTCTGAACATTCAAGGGGCTCAAAACCGGTAGATGGTCTAGTTGCAGTTGATGACCATGAGAAGCTGTTACAAACCACTCCACCACATCTGAAAGATGTTCAACTCAAACCTCATAGTGGTTCTGCTAGAAGTTGCACTAAAGTGCACAAGAAGGGGATTGCGCTTGGTAGGTCAGTGGACCTTACGAAGTTCAGTGACTATGATGAATTAATTGCTGAATTGGATCAGCTGTTTGGCTTTGGAGGTGAATTAATTTCTCCACAAAAAGAATGGCTTATTGTCTACACTGACAATGAGGGTGACATGATGCTTGTTGGTGATGATCCGTGGCAGGAGTTTTGTGCCATGGTCCGCAAAATTTATATCTACCCTAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTAAGTTCAAAAAACGAAGAGAATCAATCAGCTAGTGAAGGTGTAGATGCACAAGAGATTAAATGCCAGCTGCATCATTCAGCTTCAGACTCCTGA 2565 0.4596 MASSEVSIKGNSVNGKGESYSCVYNNNNNNNNDAAEGQDASASSAARDAEVALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQLAEQHMPVYNLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVGKVPPLAPPPRFNVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGTEWRFRHIFRGQPRRHLLQSGWSIFVSSKRLVAGDAFIFIRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAIMTGTMFTVYYKPRTSPAEFIVPYDQYMESLKTNYTIGMRFKMRFEGEEAPEQRFTGTIIGMEDADSKRWPKSNWRSLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANAVPSSPDSSVLTREVSSKVSIDPLPTSGFPRVLQGQELSTLRGNFAEGNESDTGEKSVVWPPATDDEKIDVSISRRYGSESWMSMGRHEPTYSDLLSGFGGHGDHSSHPSFVDQSGPVANPGRKHLLDRDGKLNVLGSPWPVMPPSLPLNLLDSNIKGSAQGSDTTYQVRGNLRYSAFGEYPVLHGHKVGQPLGNLLMPPPPPTQYESPHSRELLPKPISAKTCEVAKPKDGDCKIFGISLLSCPIAPEISHRNVASEPVGHMHRTSHQHRTFENDQKSEHSRGSKPVDGLVAVDDHEKLLQTTPPHLKDVQLKPHSGSARSCTKVHKKGIALGRSVDLTKFSDYDELIAELDQLFGFGGELISPQKEWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGVDAQEIKCQLHHSASDS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3238g00041 854 SMART B3_2 159 261 IPR003340 GO:0003677
Gabi3238g00041 854 SUPERFAMILY CAD & PB1 domains 734 808 - -
Gabi3238g00041 854 Pfam Auxin response factor 285 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi3238g00041 854 FunFam Auxin response factor 726 820 - -
Gabi3238g00041 854 FunFam Auxin response factor 322 394 - -
Gabi3238g00041 854 MobiDBLite consensus disorder prediction 391 409 - -
Gabi3238g00041 854 MobiDBLite consensus disorder prediction 391 424 - -
Gabi3238g00041 854 CDD B3_DNA 157 259 IPR003340 GO:0003677
Gabi3238g00041 854 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 820 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3238g00041 854 MobiDBLite consensus disorder prediction 673 698 - -
Gabi3238g00041 854 MobiDBLite consensus disorder prediction 670 698 - -
Gabi3238g00041 854 MobiDBLite consensus disorder prediction 820 854 - -
Gabi3238g00041 854 Pfam AUX/IAA family 696 818 IPR033389 -
Gabi3238g00041 854 SUPERFAMILY DNA-binding pseudobarrel domain 153 288 IPR015300 -
Gabi3238g00041 854 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Gabi3238g00041 854 ProSiteProfiles PB1 domain profile. 731 813 IPR000270 GO:0005515
Gabi3238g00041 854 Gene3D - 156 261 IPR015300 -
Gabi3238g00041 854 Gene3D - 727 820 - -
Gabi3238g00041 854 Gene3D - 322 392 - -
Gabi3238g00041 854 FunFam Auxin response factor 157 261 - -
Gabi3238g00041 854 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Gabi3238g00041 854 MobiDBLite consensus disorder prediction 820 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3238g00041 Gabi-Chr3238 438087 443749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3238g00041 1 844 B3 DNA Binding Superfamily AT5G62000 63.310 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3238g00041 AUX_IAA 2.3e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3238g00041 - - gmx:100815956 1442.56