Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3238g00040 ATGCATTTCGCAAGTCTCGACGACACTCCAATGTTCCGCCAACAGCTCCAGTGCTCGGAGGAAAGTGCAGAATCATTACGCTCTAGATGCTGGAAGTTCTACAAAGGATGTCGAAAGTATACGGAAGGGCTTGGAGAGGCATATGATGGGGACATCGCATTTGCAAGTGCCCTTGAAAATTTTGGAGGAGGGAATAGTGATCCTCATTTTGTTGCTTTGGGAGGATCTGTTATGGACAAATTTACTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCACAAGTAGAGCACGTGCTCAATGACCGGTTACTACACATTATCAATGTGGACATCCATGAAGTCAAGGAAGCTCGGAAGCTTTTTGACAAAGCTTCCCCTGTATATGACCAGGCACGTGAAAAGTTTATGTCATTGAGAAAAAGCACTAAGATTGATGTTGTTACTGCCACAGAAGAGGAATTACAGAATGCAAGAACGTCATTTGAGGAAGCCCGTTTCAATCTGGTTGGTGCTGTTAATAACATCGAGGCCAAGAAGAGATTTGAGTTTTTAGAGGCTGTCACTGGAATAATGGATGCTCATCTTCGATACTTTCAGCAGGGATATCAGCTATTGCATCAGATGGAACCTTTCGTTGGCGAGGTTTTGGATTATGTACAACAGTCAAGAGAAAGTTACAATAAGGAGCAGATTTCACTTTATAAAAGAATGCAAGAATACAAAAGACAAGTTTATCAAGAAAGTAGGATGTCCTTGAATGGCCCTTATGGTTCTCCTAGTGCAGACTGTGTGCATCCTTTTTCTAGGATATCAAATGAAGTGGTATATGTCGTAACGGAATCTGCCGCAAGTGGAAAGGTTCAAATCATTCGACAAGGGTATCTTTCGAAACGATCCTCCAGTTTGAGGGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTGTACTACTATCGCAAACCATGGAACGGGTCATATGGCAGCAATCAATCATCTCCAAAGAGGAATAGTGCCACGGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCCTCTCATTACCATGGGGGTGTCCATGATGAAGCCCGTCATACAGTAAACCTGCTGACGTCAACAATCAAGGCTGATGCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCACCATCCAAGAACTATACACTGCAGGCAGAAAATGCACTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTTCCTCCTTGTTGAGTGTCCAGACACTGGGAACGACTCTCTCAGCTGACTCAGAAAACGGTGACTCTGACTCTGCCAACAAGGTTGATGTGGTAGAAAGTTCTCCAGATAATGATCGCACAGTGAATGAGAAGGCTACATCCAAGAATTCCACACCTGATAACCATTTACGTTCGTCTAAAAGTATGCAGTTGCATAAACACGGCATAAGTAGTGAAAAGCCAATTGATGTTCTTAGAAGGGTGTGCGGTAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCTTTAAACCTCGGCATCCTTATATGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTACGATCACTGACACTTGATGTGAAAGTATGGGACCCCTCTGTCTTAAGCATGTTCAAGTCACTAGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGCTGTTACCTTCGACGAGTACTTTGCAAACTGATGACAGCTCTTCTGGTTCATCCAAGGCAGACATAGACAAGCCATTTCATGCAAGAAAACCAAAACATGATGAGTCTATTTCATTAAAGGAGAGGTTCATTCACGCAAAGTATTCTGAGAAAATCTTTGTTCGCCGGACAACGAAAAACCACCCTACCTTTTCACTGGCACAACAGGTGTGGGAAAGCATCTACGCCAATGACAAGAAAGCGGTATACCGGCATATTGTCCAGTCAGATGTGGATGTCAATGCCATCAGTCGGCAAGCATTATCTGGAGGTGACTCTTTTAACGTGGCTTCTTCAAGTAATTCAAACATTTCATCGCAAAATGAAAATCGGTTGATTGAGGATATAAAAGATGGTTCTAGTGTGCTACACCTGGCCTGCCTAACTGGTGACGTTGGCATGGTGGAGCTGCTCCTACAGCGTGGGGCAGATATAAATGCTTATGATTCAAGCGGTCGTACACCACTACATTACTGTATTATCAGAACGAAGACCGAAGCTGCGAAAGTCCTTATTACCAGGGGGGCCAATCAACATGTCGCAGATAAAGAAGGGAACACTCCTCTTAAGTTTGCATCAGAATCCGACTCTGTTAGCAATGAAATTCTCGCTCTCTCGGCAAGCAGATGA 2409 0.4317 MHFASLDDTPMFRQQLQCSEESAESLRSRCWKFYKGCRKYTEGLGEAYDGDIAFASALENFGGGNSDPHFVALGGSVMDKFTIALREISTYKELLRSQVEHVLNDRLLHIINVDIHEVKEARKLFDKASPVYDQAREKFMSLRKSTKIDVVTATEEELQNARTSFEEARFNLVGAVNNIEAKKRFEFLEAVTGIMDAHLRYFQQGYQLLHQMEPFVGEVLDYVQQSRESYNKEQISLYKRMQEYKRQVYQESRMSLNGPYGSPSADCVHPFSRISNEVVYVVTESAASGKVQIIRQGYLSKRSSSLRGDWKRRYFVLDSRGMLYYYRKPWNGSYGSNQSSPKRNSATENGSGLLSRWLSSHYHGGVHDEARHTVNLLTSTIKADADQSDLRFCFRIISPSKNYTLQAENALDQMDWMEKINGVISSLLSVQTLGTTLSADSENGDSDSANKVDVVESSPDNDRTVNEKATSKNSTPDNHLRSSKSMQLHKHGISSEKPIDVLRRVCGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLSMFKSLGNLFANSVWEELLPSTSTLQTDDSSSGSSKADIDKPFHARKPKHDESISLKERFIHAKYSEKIFVRRTTKNHPTFSLAQQVWESIYANDKKAVYRHIVQSDVDVNAISRQALSGGDSFNVASSSNSNISSQNENRLIEDIKDGSSVLHLACLTGDVGMVELLLQRGADINAYDSSGRTPLHYCIIRTKTEAAKVLITRGANQHVADKEGNTPLKFASESDSVSNEILALSASR 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3238g00040 802 SUPERFAMILY ArfGap/RecO-like zinc finger 496 636 IPR037278 -
Gabi3238g00040 802 ProSiteProfiles PH domain profile. 292 425 IPR001849 -
Gabi3238g00040 802 SMART PH_update 293 427 IPR001849 -
Gabi3238g00040 802 CDD BAR_SFC_plant 15 215 IPR035670 -
Gabi3238g00040 802 PRINTS HIV Rev interacting protein signature 527 544 IPR001164 GO:0005096
Gabi3238g00040 802 PRINTS HIV Rev interacting protein signature 550 571 IPR001164 GO:0005096
Gabi3238g00040 802 PRINTS HIV Rev interacting protein signature 508 527 IPR001164 GO:0005096
Gabi3238g00040 802 ProSiteProfiles Ankyrin repeat profile. 711 743 IPR002110 GO:0005515
Gabi3238g00040 802 Gene3D Arf GTPase activating protein 477 642 IPR038508 -
Gabi3238g00040 802 CDD PH_ACAP 295 429 - -
Gabi3238g00040 802 Pfam Ankyrin repeats (3 copies) 716 789 IPR002110 GO:0005515
Gabi3238g00040 802 Gene3D - 653 800 IPR036770 -
Gabi3238g00040 802 MobiDBLite consensus disorder prediction 437 492 - -
Gabi3238g00040 802 MobiDBLite consensus disorder prediction 586 613 - -
Gabi3238g00040 802 ProSiteProfiles Ankyrin repeat region circular profile. 744 776 - -
Gabi3238g00040 802 ProSiteProfiles Ankyrin repeat region circular profile. 711 742 - -
Gabi3238g00040 802 SUPERFAMILY Ankyrin repeat 709 790 IPR036770 -
Gabi3238g00040 802 SUPERFAMILY BAR/IMD domain-like 5 315 IPR027267 -
Gabi3238g00040 802 Pfam Putative GTPase activating protein for Arf 499 635 IPR001164 GO:0005096
Gabi3238g00040 802 CDD ArfGap 499 628 - -
Gabi3238g00040 802 SUPERFAMILY PH domain-like 293 439 - -
Gabi3238g00040 802 MobiDBLite consensus disorder prediction 468 482 - -
Gabi3238g00040 802 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 478 641 - -
Gabi3238g00040 802 ProSiteProfiles ARF GTPase-activating proteins domain profile. 496 641 IPR001164 GO:0005096
Gabi3238g00040 802 SMART ANK_2a 744 773 IPR002110 GO:0005515
Gabi3238g00040 802 SMART ANK_2a 711 740 IPR002110 GO:0005515
Gabi3238g00040 802 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Gabi3238g00040 802 Gene3D - 285 434 IPR011993 -
Gabi3238g00040 802 MobiDBLite consensus disorder prediction 586 600 - -
Gabi3238g00040 802 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Gabi3238g00040 802 ProSiteProfiles Ankyrin repeat profile. 744 776 IPR002110 GO:0005515
Gabi3238g00040 802 PANTHER CENTAURIN/ARF 5 800 IPR045258 GO:0005096
Gabi3238g00040 802 Pfam PH domain 294 424 IPR001849 -
Gabi3238g00040 802 SMART arf_gap_3 496 641 IPR001164 GO:0005096
Gabi3238g00040 802 MobiDBLite consensus disorder prediction 437 455 - -
Gabi3238g00040 802 Pfam BAR domain of APPL family 5 233 IPR004148 GO:0005515|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3238g00040 Gabi-Chr3238 388141 405955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3238g00040 508 657 C2H2 Transcription Factor Family AT4G21160 38.037 2.70e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3238g00040 K12489 - gmx:100792517 1225.31