Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3238g00035 ATGCCTTTTCAAATCATGGATCCGAGGGACGTTCCTGCCTCATCCCACTTTTTTGATGACATTTCCTTTCGTTCTGAGAGGAATGTTGGATTGCAGAAGCCAAAATCCATTCATGACCAATACCCAAAAGGAAAGAATGGAATGGTAGCATCGCCTGGCAACATTCTGAATGCTTCTTCATCCCTTGAAATAAATGCAAAATCTGGCTTGCTGATGTCGCAGACTAGTCTATCTCGGGAAAGTATAGAAAAACTACGTTTTGGTGGAGAAGAAGACAATGTTGATGTTTTGAAGGATTCGAAGGAATCGTTACATTATCATCCCAGATCGTGGTCTGATGTGTGTATGCAGTCAGCACCTACCTCATATGGTTTAATTGGGAACAAGATTGTCACCAATGCTGCCCCTTGTGAAAGTAGTCTATTCTCAAGCTCACTGTCTGAGATTTTTAACCAAAAGTTGAGGTTACCGAGGAATAATGTTCTGTCTGATCGGCCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCGTATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGGATATGGTTCTCATGTCAGAACAAATGATGACTTCGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTAGAAGGAGATGAACATTTGACTTCAGGCAAAAGTACTAGTGGTCTGGATGGAGATTGTGTTTTCTTGGGAGGTTCTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTGAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTACACAGCCTGTAAGCATCGTGGGTTTGTTATGATTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACACTATTCAATTCCAAAGGTCAATGCTCCAGAGAAAGATATCGGCCATGGTACGCTGATGCTATCTGGTCTTGATTCATCTGTTCTAAATGATGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATTCAGAAATGAATCATCACAAATTTATAGAGTTTTATGATGTTCGAGCTGCAGAAGCCGCTCTTCGTGCATTGAACAGGATTGACATTTCAGGGAAGCAGATCAAGCTTGAACCTTGCCATCCTAGTCTGATGCAGCATTCTTATAAGGGGCAAGATGAACGAGATCTTGGTCAAAGTATTATTGACAACTTATCATTAGGACAGAAGGCAACAGTGTCTTCTGGAGTAATTGGATCTGGCTGCTTGGAAAATGGATATAGTCAGAGATTTCAATCTGGAATGCGGCAACCTTTGAATGCATTTATTGATAATGCATTCTTTCATGTGAATTCTGGCATTCACAACACTGGGATAGGGGCATCTGCTGGAAAAGTGTCTGGCATTTGTGAGTCCAGTAACTTTGTTGATGCAATGAAATTTGCATCTAGTCCGAGCTTTCATCCTCATTCCTTACCTGAGTATCGTGATAGTTTGGCTAATGGTAGTCCTTATAACTTTTCAAGCACCATTAGCAACATGACTAGCAATATAGGTACTCCAGCAACAGAAGCCTCTGATGGCGTGCATATTCAGGGAATGAGCACAACTGGGAACTTAGCAGAATTTAATGTAGGAGGAAATGAGATCCGCCCACATCATGGACTTTATCATATGTGGAACAGCTCCAATTTGCATCAGCAACGGTCATCAAGTACCATGATTTGGCAGAAAGCACCATCCTTTGTTAATGGTGCTTGTGCTCCATGCCTTCCACAGATGCCAAGCTTTGCTAGAACACCGCCTCAAATGCTGAGAACTCCACATATGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAGAGGCAACATTCTTACTTGGGAGAGTCCCCCGAGGCTTCTGGTTTTCGGTTGGGTTCTCTAGGAAGTGGAGGTTTTCATGGTTCCTGGCAGTTGCATCCACTGGATTTTTCTTCTCACAACATATTTTCTCATGTTGGCGGGAATGGCACTGAACTGACATCTAATGCTGGGCAGAGCTCTCCTAAGCAGTTGTCACATGTTTTCCCTGGGAGACATCCTATGACTTCAATGTCAAAATTTGATTCTACCAACGAACGAATGAGAAACCTATATCACCGTAGAAGTGAAGCAAACACCAACAATGTTGATAAAAAACAGTATGAACTTGACCTAGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATTGACGAGCAATGTCGCGGAACTTATGATTTCCTGTATTTACCAATTGACTTCAAGAATAAATGTAATGTTGGCTATGCTTTCATAAATATGACTGATCCTGGTCAAATTATTCCTTTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCCTCACTTGCATATGCCCGGATTCAAGGAAAGACTTCTCTTGTTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACGGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTGCCAATATTAGATTGAAACCTGGAAAATCTCGTACTTCTGGCAATGAAGAGAATCGCAGCCAAGGGAGTCCTTCAACATTGGGTGGAGAAGAGTCTGCTAATGGAATAGACTCTTCATTGAGCACTTAA 2892 0.4174 MPFQIMDPRDVPASSHFFDDISFRSERNVGLQKPKSIHDQYPKGKNGMVASPGNILNASSSLEINAKSGLLMSQTSLSRESIEKLRFGGEEDNVDVLKDSKESLHYHPRSWSDVCMQSAPTSYGLIGNKIVTNAAPCESSLFSSSLSEIFNQKLRLPRNNVLSDRPITVGSLPEEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGYGSHVRTNDDFEDFDLFSSGGGMELEGDEHLTSGKSTSGLDGDCVFLGGSKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYSEMNHHKFIEFYDVRAAEAALRALNRIDISGKQIKLEPCHPSLMQHSYKGQDERDLGQSIIDNLSLGQKATVSSGVIGSGCLENGYSQRFQSGMRQPLNAFIDNAFFHVNSGIHNTGIGASAGKVSGICESSNFVDAMKFASSPSFHPHSLPEYRDSLANGSPYNFSSTISNMTSNIGTPATEASDGVHIQGMSTTGNLAEFNVGGNEIRPHHGLYHMWNSSNLHQQRSSSTMIWQKAPSFVNGACAPCLPQMPSFARTPPQMLRTPHMDHHVGSAPVVTASPWERQHSYLGESPEASGFRLGSLGSGGFHGSWQLHPLDFSSHNIFSHVGGNGTELTSNAGQSSPKQLSHVFPGRHPMTSMSKFDSTNERMRNLYHRRSEANTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKTSLVAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANIRLKPGKSRTSGNEENRSQGSPSTLGGEESANGIDSSLST 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3238g00035 963 PANTHER RNA RECOGNITION MOTIF-CONTAINING 79 955 - -
Gabi3238g00035 963 CDD RRM1_MEI2_like 269 344 IPR034453 -
Gabi3238g00035 963 Gene3D - 264 353 IPR012677 -
Gabi3238g00035 963 FunFam Protein MEI2-like 1 354 446 - -
Gabi3238g00035 963 MobiDBLite consensus disorder prediction 725 751 - -
Gabi3238g00035 963 CDD RRM3_MEI2_like 796 881 IPR034454 -
Gabi3238g00035 963 Pfam RNA recognition motif 2 793 889 IPR007201 -
Gabi3238g00035 963 SUPERFAMILY RNA-binding domain, RBD 267 427 IPR035979 GO:0003676
Gabi3238g00035 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Gabi3238g00035 963 MobiDBLite consensus disorder prediction 935 963 - -
Gabi3238g00035 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Gabi3238g00035 963 SMART rrm1_1 795 871 IPR000504 GO:0003723
Gabi3238g00035 963 SMART rrm1_1 271 339 IPR000504 GO:0003723
Gabi3238g00035 963 SMART rrm1_1 356 424 IPR000504 GO:0003723
Gabi3238g00035 963 Gene3D - 354 447 IPR012677 -
Gabi3238g00035 963 FunFam MEI2-like protein 5 isoform 2 259 353 - -
Gabi3238g00035 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Gabi3238g00035 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Gabi3238g00035 963 MobiDBLite consensus disorder prediction 904 963 - -
Gabi3238g00035 963 SUPERFAMILY RNA-binding domain, RBD 795 879 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3238g00035 Gabi-Chr3238 333331 342399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3238g00035 265 421 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 2.84e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3238g00035 - - gmx:106798747 1595.1