Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3238g00030 ATGATCAATGGAACCACAAAGAAAGATACTCAGAATCATTACACAACGACGGCAAAGTTAACAAAATACCTACTTGATAGCTTTCGCGTAATCGATATCGCAGTTGCTAAAGTGGATCCAAAACATGGAAAGAGGTCACGTCCTTTCGAAGAAGCGCAAGAGAAAGAAGAGGAGCAACCGTTCCCGTTTTATTCTACTCGGTCCCATCAAGACACGTTAGCCATTGTCTCGGCCCTTGTTCAAGTCATTGGTGGCAATCCAGTGCATATAGATCCAATAACAGCGTCCCAATCCAGTGCTTCAGAGAATGAACAACTCCAACCACCACAAAATCAAGGAAACATAAAAAGGCACTATAGAGGAGTGAGGCAGCGACCATGGGGCAAGTGGGCCGCGGAGATTCGCGATCCTAAGAAAGCAGCGAGGGTTTGGCTTGGAACTTTTGACACTGCTGAGGCTGCTGCACTTGCATATGACAAAGCAGCTCTCACTTTTAAAGGAAACAAAGCTAAGCTTAATTTTCCAGAAAGGGTTCAACTCAGTACTTCTGAATTTGGTTACCTTACAAATCGTCCCAATGATCAATCCCATGTGATGTCTAGCACTGGCGGTCATAATGAACAAACGCATACCCCAAATGCTCTTGCATCTCCATATCCACACTTTTCGGTAGAAACATTTCAATATGCCCAACTTCATCAAAGTGGTACTAACAACAACTACTTCAATAATGCTATGCCTCGTTCCTATGGGAGTGACACGTTTGTTTTGTCTTGTCCGTTATCAGCTGCCACTTCGTCTTCATCGCCATCTTTTGAACTATCTGATCAATATTCTCAACAACAAGAACAGCTTTCGATGCAATTTGGAGGTTCTTCTTCTACTTCTGAGCCTTCTAGGAATGGGACAAGTGATTTGAATGGTTGA 927 0.4337 MINGTTKKDTQNHYTTTAKLTKYLLDSFRVIDIAVAKVDPKHGKRSRPFEEAQEKEEEQPFPFYSTRSHQDTLAIVSALVQVIGGNPVHIDPITASQSSASENEQLQPPQNQGNIKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDKAALTFKGNKAKLNFPERVQLSTSEFGYLTNRPNDQSHVMSSTGGHNEQTHTPNALASPYPHFSVETFQYAQLHQSGTNNNYFNNAMPRSYGSDTFVLSCPLSAATSSSSPSFELSDQYSQQQEQLSMQFGGSSSTSEPSRNGTSDLNG 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3238g00030 308 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Gabi3238g00030 308 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Gabi3238g00030 308 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Gabi3238g00030 308 CDD AP2 118 176 IPR001471 GO:0003700|GO:0006355
Gabi3238g00030 308 MobiDBLite consensus disorder prediction 91 116 - -
Gabi3238g00030 308 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Gabi3238g00030 308 MobiDBLite consensus disorder prediction 266 308 - -
Gabi3238g00030 308 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Gabi3238g00030 308 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Gabi3238g00030 308 MobiDBLite consensus disorder prediction 39 62 - -
Gabi3238g00030 308 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Gabi3238g00030 308 PANTHER DNA-BINDING DOMAIN 65 265 IPR044808 GO:0003700|GO:0009873
Gabi3238g00030 308 MobiDBLite consensus disorder prediction 91 114 - -
Gabi3238g00030 308 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3238g00030 Gabi-Chr3238 304355 307044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3238g00030 61 191 AP2-EREBP Transcription Factor Family AT5G61890 60.284 6.54e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3238g00030 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3238g00030 - - gmx:100793410 237.269