Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3238g00023 ATGAGTGGTTTGAGGGTAGTAGAGTGCCTTAGACCCCTTGTTGAGACCAAAGATTGGGATTATGTTGTTGTTTGGAAATATGGTGATGACCCAACAAGGTTTATTGAGTGGATGGGTTGCTGTTGTAGAGGGAGTTGCAGTGGAAATATTGAGCAGGTGAATCCCAAAGAGCAAATAGATGAACCACACCACTTGGCTCCCATTTGCAGGGATACCCATTTTCAGCATCTAGTAAAAACAAAGGCTTGTGAGGCTCTTGTGAGACTTCCTTTTGCAATGTCTTTGTATTCAGGTGACCATGGGGAGGTTGCAATATCACAGCAACCAAGATGGCTTATTCAGGAGGATTCAATTGGAACTCAAGTTTTGATACCTATTGTTGGTGGACTTATTGAGCTCTTCACTGCAAAGATGATTCCAAAAGATATAAATATCATAGAGTTCATAACAGCACACTGTTGTGTCTCTTTAAAGCAAGAAGCCATATCTTCGCAGAACTACACCAGTCCAAACTTCAACGAACATCTGCCATTAAAGGAACAACACCCACAGAGGTGGCCACCACTCATGCCAACTTTTACTCCTAGTGTCTATCTGCCAGCAGCAAACCAGTCCAGCTCATATCCTAGCTCTGAAGGACCCTCCAGTGGGTCTAATCCTTCAATTGAACACCCATCATTTGATTCAAAGTTTGTTTGCTTGATTCCGCAAGGATATAAATCTGTTAAAACATCTCATATCCCTAAAACTAAAAGGCCCAAGTACAATGAAACTTCAGGGAAACAGCAGAGAGGTTTGAGTTCCCATTTTAGCAATGGGGAAGAAGATAAAGCAAAGTTGGTCAGGGAGTCTCAAAATGAAGGTTACCATGCTAGAAATCTTGTCACAGAGAGGAATAGGAGGAACAAGATAAAAAAGGGACTTTTTACTCTACGGTCTCTAGTCCCAAACATAACCAAGATGGATAGAGCAGCAATTCTTGGAGATGCAATTGACTATATAAAGGATTTGCAGAGGCAAGTAAAAGAACTTCAAGATGAGGCCAAGGCTTTGGATGTACAGGACTATGAAACGAACACACCACAATTGAGGATGCCAACAGGCAAAGATCAAGGAGGAACAGAAAGCCTCCCTCTAACTGAGCTCAATCAAAGTTCCTCTGAGTGCACTAAAAAGAAGCAGATGGAGGTGCAAGTAGAAGTGCATCACATTGGCAGGACAGGTTTCTTGATTAAGTTATATCGTAAGCAGAAGCAAGGTGGATTTTCAAGGTTGATGGAAGCTATACATTCATTTGGACTGCAGGTGGCTAATGTCAATATGACCACATTTGATGGCAAAGTTCTGAACATTCTGACAGTTGAGGCAACAAACAAGCAGGATATTCACCCAACGAAACTGAAAGAGTATTTGATACAGCAAACAGGTTGA 1431 0.4179 MSGLRVVECLRPLVETKDWDYVVVWKYGDDPTRFIEWMGCCCRGSCSGNIEQVNPKEQIDEPHHLAPICRDTHFQHLVKTKACEALVRLPFAMSLYSGDHGEVAISQQPRWLIQEDSIGTQVLIPIVGGLIELFTAKMIPKDINIIEFITAHCCVSLKQEAISSQNYTSPNFNEHLPLKEQHPQRWPPLMPTFTPSVYLPAANQSSSYPSSEGPSSGSNPSIEHPSFDSKFVCLIPQGYKSVKTSHIPKTKRPKYNETSGKQQRGLSSHFSNGEEDKAKLVRESQNEGYHARNLVTERNRRNKIKKGLFTLRSLVPNITKMDRAAILGDAIDYIKDLQRQVKELQDEAKALDVQDYETNTPQLRMPTGKDQGGTESLPLTELNQSSSECTKKKQMEVQVEVHHIGRTGFLIKLYRKQKQGGFSRLMEAIHSFGLQVANVNMTTFDGKVLNILTVEATNKQDIHPTKLKEYLIQQTG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3238g00023 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Gabi3238g00023 476 Pfam Helix-loop-helix DNA-binding domain 295 338 IPR011598 GO:0046983
Gabi3238g00023 476 MobiDBLite consensus disorder prediction 270 286 - -
Gabi3238g00023 476 Gene3D - 280 355 IPR036638 GO:0046983
Gabi3238g00023 476 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 150 IPR025610 -
Gabi3238g00023 476 Coils Coil 327 354 - -
Gabi3238g00023 476 MobiDBLite consensus disorder prediction 243 287 - -
Gabi3238g00023 476 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 473 - -
Gabi3238g00023 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 354 IPR036638 GO:0046983
Gabi3238g00023 476 SMART finulus 294 343 IPR011598 GO:0046983
Gabi3238g00023 476 MobiDBLite consensus disorder prediction 201 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3238g00023 Gabi-Chr3238 207953 210582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3238g00023 290 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 38.462 7.29e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3238g00023 bHLH-MYC_N 5.7e-17 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3238g00023 - - gmx:100807261 659.833