Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3238g00022 ATGGCTCACAAGCACTCCAACAACGACAATGATTCTTCTCCATCAAAAGATTCTTCACCATCTAAATCGGACAAGGACCCTCCTGATGATGATTCAGCTCCATCACCAAAATCTCATCATTCAGATTCTCCCGAAAGTGCTCCGTCTCCGTCGCCGCCGCAGCATCGGTCAAAGCCTCCACCTCCACCACCATCACCATCACCACCACCACCACCCTTACCCTCTCCACCGCCACCATCAGCACCACCTCCCTCTCAACCAGCATACTCTCCACCACCACCCTCGCCATCGCCACCACCACCACCACGGCCGTCGTTGCCGCCAACTTTGAACGATGTCAACTCTTCCTCTCCTCGTAAACTGTCACCACCACCGCCACAGATACAAGCCCCACCTCCCCCTGAGAGATTTTCTTCTCCAACTTCACGTAGTGCACCCTCCAATTATTCAACCAATGGAATATCTGAAAACTCACCAAACAAATCACCCCTCGCCCCAGGGTCAAACCGTCAAGCCATGCACGGTGGTGGTGGCAGTGGCGGTGGTGGTGACTCTTATGCAAATTCAAGGGGTTCTTCTCCTGGCTCCTCCTCCGGTGACAATGCAGGCAAATATATTGGATATACCCTCGCTGGGGTTTTCGTTGTTGCCTTAGTTGCTGTAGTTGTTATTTTCACCTTTAGGAGGAAGAAAACAAAAGATGTCTATGGTGCACCCTATATGCCACCCCCTAATAATATCCTTCGTGTAAATTCAGGTGCTGATGGGCATTACTATATACAGCAGCCTGGCCCACAAGCTTCTCTTGCAAACAACTATGGAAATGGGAACATTGCAGGAAGCATGAAACATTTAGGAGGAACTCATTTAGATTCATCACAGCCCAAGAGTGCTCAAATAGTTTTTAGCTACGATAACGTTATGGAAATGACTAATGGATTTTCTAGTCAAAACGTTGTTGGAGAAGGAGGATTTGGGTGTGTTTACAAGGGTTGGCTTCCTGATGGAAAAGAAGTTGCAGTCAAGCAACTTAAGGCTGGCAGTGGACAAGGAGATAGGGAATTCAGGGCTGAAGTGGAGATAATCAGTCGTGTTCATCATCGATATTTGGTATCATTAGTTGGTTATTGCATATCTGAGCAGCAAAGAGTGCTTATCTACGAGTATATTCCTAATGGGACACTCCATCATCACTTGCATGAAAGTGGACTGCCAGTGTTGGATTGGGACAAGAGGCTGAAGATAGCAATTGGCGCTGCAAAGGGCCTGGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAGTCCGCAAACATACTTTTGGATGATGCTTATGAGGCAAAGGTTGCAGATTTTGGACTTGCGAGGCTAGCCGATGCTGCCAATACCCATGTATCAACTCGGGTTATGGGAACATTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTGACGGATAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTATAACTGGAAGAAAACCTGTTGATCAAACTCAGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGTCTCGTCCACTTCTCCTTCGTGCAATTGAGACACGTGAATTTGGGGAACTAATAGACCCAAGACTTGAAAATCACTTTGTGGAGAGTGAAATGTTCAGAATGATTGAAGCAGCTGCAGCTTGTGTTCGCCATTCAGCTCCTAGACGGCCTCGTATGGTTCAGGTGGTAAGAGCCTTAGATAGTGGAGATGAAATATCTGATCTATCTAATGGGGTGAAATTTGGTCAGAGCACTATTTATGATTCTGGCCAGTATGATAAAGACATTATGCTATTCAGGAGGATGGCCAATGGCAGCTTTGTTAGTTCTGAATTTGATATGCACAGTACAGAATACAGTTTTTCAAGACAGACGCCTGAATCCCAACATTCAGAATCTAGAGCTTTCAACAAGCATAGGAGCAGTACTGAATGA 1998 0.4615 MAHKHSNNDNDSSPSKDSSPSKSDKDPPDDDSAPSPKSHHSDSPESAPSPSPPQHRSKPPPPPPSPSPPPPPLPSPPPPSAPPPSQPAYSPPPPSPSPPPPPRPSLPPTLNDVNSSSPRKLSPPPPQIQAPPPPERFSSPTSRSAPSNYSTNGISENSPNKSPLAPGSNRQAMHGGGGSGGGGDSYANSRGSSPGSSSGDNAGKYIGYTLAGVFVVALVAVVVIFTFRRKKTKDVYGAPYMPPPNNILRVNSGADGHYYIQQPGPQASLANNYGNGNIAGSMKHLGGTHLDSSQPKSAQIVFSYDNVMEMTNGFSSQNVVGEGGFGCVYKGWLPDGKEVAVKQLKAGSGQGDREFRAEVEIISRVHHRYLVSLVGYCISEQQRVLIYEYIPNGTLHHHLHESGLPVLDWDKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAYEAKVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDQTQPLGDESLVEWSRPLLLRAIETREFGELIDPRLENHFVESEMFRMIEAAAACVRHSAPRRPRMVQVVRALDSGDEISDLSNGVKFGQSTIYDSGQYDKDIMLFRRMANGSFVSSEFDMHSTEYSFSRQTPESQHSESRAFNKHRSSTE 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3238g00022 665 Gene3D Transferase(Phosphotransferase) domain 1 390 601 - -
Gabi3238g00022 665 FunFam Proline-rich receptor-like protein kinase PERK8 287 389 - -
Gabi3238g00022 665 MobiDBLite consensus disorder prediction 46 108 - -
Gabi3238g00022 665 MobiDBLite consensus disorder prediction 119 139 - -
Gabi3238g00022 665 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Gabi3238g00022 665 PRINTS Proline rich extensin signature 72 88 - -
Gabi3238g00022 665 PRINTS Proline rich extensin signature 50 71 - -
Gabi3238g00022 665 PRINTS Proline rich extensin signature 20 36 - -
Gabi3238g00022 665 PRINTS Proline rich extensin signature 90 107 - -
Gabi3238g00022 665 Gene3D Phosphorylase Kinase; domain 1 280 389 - -
Gabi3238g00022 665 ProSiteProfiles Protein kinase domain profile. 314 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3238g00022 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Gabi3238g00022 665 MobiDBLite consensus disorder prediction 18 38 - -
Gabi3238g00022 665 MobiDBLite consensus disorder prediction 140 167 - -
Gabi3238g00022 665 Pfam Protein tyrosine and serine/threonine kinase 317 586 IPR001245 GO:0004672|GO:0006468
Gabi3238g00022 665 CDD STKc_IRAK 320 588 - -
Gabi3238g00022 665 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 214 635 IPR047117 -
Gabi3238g00022 665 SMART serkin_6 314 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3238g00022 665 MobiDBLite consensus disorder prediction 642 665 - -
Gabi3238g00022 665 MobiDBLite consensus disorder prediction 1 198 - -
Gabi3238g00022 665 FunFam proline-rich receptor-like protein kinase PERK8 390 602 - -
Gabi3238g00022 665 SUPERFAMILY Protein kinase-like (PK-like) 294 587 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3238g00022 Gabi-Chr3238 202226 206961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3238g00022 194 641 Trihelix Transcription Factor Family AT1G70460 63.124 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gabi3238g00022 PK_Tyr_Ser-Thr 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3238g00022 - - gmx:100797563 764.607