Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3238g00003 ATGGCTTCTTCAATGAGGATCTCAAGACTAATCACTCGCTCCTTTTCTTCTGTTTCTTCTACCTCTTTGTTTTCTCGAGGTAGATTTTGCTTACCACATCATAGACTCTGGAAATATAGCACTGTTGCTGCCAGTGAAGAACCCATTAAATCACCAGTACAAGTAGAGCACACCCAGCTCTTAATTGATGGAAAGTTCGTAGATGCTGCTTCTGGTCAAACTTTTCCAACCTTAGACCCAAGGACAGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATCGAGCTGTTGCAGCTGCACGCAGAGCATTTGATCAAGGGCCATGGCCTAAGATGGCAGCCTATGAAAGGCAAAGGATATTGTTGCGTGCTGCTGATCTGCTTGAAAAGCATAATGATGAGCTTGCAGCACTTGAGACTTGGGATAATGGGAAGCCATATGAACAATCTGCACAGATTGAAATTCCAATGCTGGTTCGCCTATTTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGATGGACCTCATCATGTGCAAATATTGCATGAACCCATTGGTGTTGCGGGTCAGATCATTCCATGGAACTTCCCTCTTGTCATGTTTGCTTGGAAGGTTGGACCAGCATTGGCATGTGGCAACACTGTTGTTCTGAAAACAGCTGAGCAGACACCATTATCTGCTTTATATGCAGCAAAACTATTTCATGAGGCTGGACTTCCTCCTGGTGTTTTAAATATAGTATCTGGCTATGGTCCAACTGCTGGTGCTGCTCTTGCTAGTCACATGGATGTGGATAAGCTTGCTTTTACTGGTTCAACTGATACTGGAAAAATTGTCCTTGAACTGGCGGCTAAAAGCAATCTTAAGCCTGTAACTTTGGAGCTTGGTGGGAAATCCCCCTTTATTGTATGTGAAGATGCTGATGTAGATGACGCTGTTGAGCTAGCACATTTTGCCTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCTAGAACATTTGTACATGAACGTGTATATGACGAGTTTGTTGAGAAAGCGAAGGCTCGTGCTTTGAAACGTGTTGTTGGTGATCCATTCAAGGGGGGAATAGAGCAAGGTCCTCAGATTGATTCAGACCAATTTGAGAAAATACTGAAGTATATCAGATCTGGTGTTGAAAGTGGAGCTACCCTTGAAACTGGAGGAGATAGGATTGGCAACAAGGGCTTCTTTATTCAACCTACTGTCTTCTCAAATGTTCAGGATGGCATGCTGATTGCTAAGGAAGAGATTTTTGGTCCTGTACAATCCATATTAAAGTTCAAGGACCTTGGTGAGGTAGTTCAAAGAGCAAATAAGACACGTTATGGCCTTGCAGCAGGGGTCTTCACAAAGAACATAGACACTGCAAATACATTGACACGAGCATTGAGAGTTGGAACTGTATGGGTAAACTGCTTTGATACATTTGATGCTGCAATTCCTTTTGGAGGGTACAAGATGAGTGGGCAGGGTAGAGAAAAAGGAGTGTACAGTCTTAAGAACTACTTGCAAGTGAAGGCTGTTGTAACTCCCTTGAAGAGCCCAGCATGGCTTTGA 1617 0.4366 MASSMRISRLITRSFSSVSSTSLFSRGRFCLPHHRLWKYSTVAASEEPIKSPVQVEHTQLLIDGKFVDAASGQTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARRAFDQGPWPKMAAYERQRILLRAADLLEKHNDELAALETWDNGKPYEQSAQIEIPMLVRLFRYYAGWADKIHGLTVPADGPHHVQILHEPIGVAGQIIPWNFPLVMFAWKVGPALACGNTVVLKTAEQTPLSALYAAKLFHEAGLPPGVLNIVSGYGPTAGAALASHMDVDKLAFTGSTDTGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDDAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRVVGDPFKGGIEQGPQIDSDQFEKILKYIRSGVESGATLETGGDRIGNKGFFIQPTVFSNVQDGMLIAKEEIFGPVQSILKFKDLGEVVQRANKTRYGLAAGVFTKNIDTANTLTRALRVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGVYSLKNYLQVKAVVTPLKSPAWL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3238g00003 538 SUPERFAMILY ALDH-like 54 531 IPR016161 GO:0016491
Gabi3238g00003 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 332 343 IPR016160 GO:0016491
Gabi3238g00003 538 FunFam Mitochondrial aldehyde dehydrogenase 2 310 499 - -
Gabi3238g00003 538 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 62 327 - -
Gabi3238g00003 538 CDD ALDH_F2BC 55 530 - -
Gabi3238g00003 538 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 43 528 - -
Gabi3238g00003 538 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 304 311 IPR029510 GO:0016491
Gabi3238g00003 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 310 499 IPR016163 GO:0016620
Gabi3238g00003 538 FunFam Aldehyde dehydrogenase, putative 500 526 - -
Gabi3238g00003 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 72 528 IPR016162 GO:0016491
Gabi3238g00003 538 Pfam Aldehyde dehydrogenase family 66 528 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3238g00003 Gabi-Chr3238 16055 20472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3238g00003 3 538 Aldehyde Dehydrogenase Gene Family AT3G48000 77.467 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3238g00003 K00128 - gmx:100777399 936.406