Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3229g00001 ATGGATGAAGATAGTAGCAATTCTTGGATAAGAAGGGCAAAATTCTCCCACACAGTCTGTCACCGATTGGATTATTCCAGATCACGCTCTTACATCATTCATTCAGAGCACAATTCGGGTTTGAAATCAAGGCCAGAAGCAGCATCAGCAGGATCAGCATCAGCATCAGCATCAGCAGCAGCAGCACCTGTTTCTAAGGTTTCACTTTCTCAGGTTAAGAAAAATCCCATGACGAACAAGCAGAGATCTTTGTCCCCTTCGCCTGAAACCTTTATTTCTGAAACCTTTAAGGAAGCCAAACATGAACAGAAGAGGTTCTCAACACCTGGCCCACGGAAGAAAGACCAGGATAAGAGAATCATGGGGAAGTTACTGAACAAGGATTCTCAGGTGTCCAATTCTAAATCCCCTTACAATAGTCCAATTAAGCACTTTGCATCAATGAAATTAAGCGACAAGTTCAGGTACCGCAAGGAATCAGGGTGGATAAAGTATTTTGACCTTGGTGGAGGAAGGGTTACTGCTGTGGAAACTGCTGAAGAATGGAACGTTGACCTCTCTCAGCTCTTTCTTGGTCTTAGGTTTGCTTATGGAGCTCACAGTCGCCTTTACCATGGTATGTATAAGGAGGAACCTGTTGCTGTAAAAATTATCAGGGTACCCGATGATGACGAAAATGGAACCTTGGCTGCTAGATTAGAGAAACAGTTCATTAGAGAAGTTACACTTTTATCTCGCCTCCACCATCAAAACGTTATCAAGTTTGTAGCAGCATGCAGAAAGCCACCTGTTTATTGTGTAGTCACAGAATATCTTTCTGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGAGAAAAACTATTTCTCTACAAAAGCTAATTGCTTTTGCTCTGGATATTGCTCGTGGAATGGAGTATATACACTCTCAAGGTGTCATTCATCGCGACCTTAAACCGGAGAATGTCCTTATTAATGAAGACTTTCACCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCATACTGCGACTTATTTGCTGATGACCCTGGTACCTACCGCTGGATGGCACCTGAGATGATCAAACGAAAATCCTATGGGAAAAAGGTTGATGTATACAGTTTTGGACTTATCTTATGGGAGATGGTGACCGGAACAATACCATATGAGGATATGACTCCTGTCCAGGCTGCTTTTGCAGTGGTAAATAAGAATTCACGGCCTGTTATTCCTTCAAACTGCCCAGCTGCAATGCGAGCTTTAATTGAGCAATGTTGGTGCATGCATCCGGACAAGAGGCCTGACTTCTGGCAGGTTGTTAAGGTATTAGAGCAATTTGAATCTTCGCTTGCTCGTGATGGAACCCTGACTCTGCTGCAAAACCCTTGTTGCCAAGATCATAAAAAAGGGCTTCGTCATTGGATTCAAAAGCTTGGTCCTGTGCATCAAAATAGTGGCCCTGTCCCTAAACCTAAATTTACATGA 1491 0.4286 MDEDSSNSWIRRAKFSHTVCHRLDYSRSRSYIIHSEHNSGLKSRPEAASAGSASASASAAAAPVSKVSLSQVKKNPMTNKQRSLSPSPETFISETFKEAKHEQKRFSTPGPRKKDQDKRIMGKLLNKDSQVSNSKSPYNSPIKHFASMKLSDKFRYRKESGWIKYFDLGGGRVTAVETAEEWNVDLSQLFLGLRFAYGAHSRLYHGMYKEEPVAVKIIRVPDDDENGTLAARLEKQFIREVTLLSRLHHQNVIKFVAACRKPPVYCVVTEYLSEGSLRAYLHKLERKTISLQKLIAFALDIARGMEYIHSQGVIHRDLKPENVLINEDFHLKIADFGIACEEAYCDLFADDPGTYRWMAPEMIKRKSYGKKVDVYSFGLILWEMVTGTIPYEDMTPVQAAFAVVNKNSRPVIPSNCPAAMRALIEQCWCMHPDKRPDFWQVVKVLEQFESSLARDGTLTLLQNPCCQDHKKGLRHWIQKLGPVHQNSGPVPKPKFT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3229g00001 496 MobiDBLite consensus disorder prediction 94 118 - -
Gabi3229g00001 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Gabi3229g00001 496 Pfam Protein tyrosine and serine/threonine kinase 197 445 IPR001245 GO:0004672|GO:0006468
Gabi3229g00001 496 FunFam serine/threonine-protein kinase HT1 274 467 - -
Gabi3229g00001 496 SUPERFAMILY Protein kinase-like (PK-like) 175 445 IPR011009 -
Gabi3229g00001 496 Gene3D Phosphorylase Kinase; domain 1 177 273 - -
Gabi3229g00001 496 Gene3D Transferase(Phosphotransferase) domain 1 274 472 - -
Gabi3229g00001 496 ProSiteProfiles Protein kinase domain profile. 189 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3229g00001 496 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 43 452 - -
Gabi3229g00001 496 FunFam Serine/threonine-protein kinase isoform 1 179 273 - -
Gabi3229g00001 496 PRINTS Tyrosine kinase catalytic domain signature 353 363 IPR001245 GO:0004672|GO:0006468
Gabi3229g00001 496 PRINTS Tyrosine kinase catalytic domain signature 307 325 IPR001245 GO:0004672|GO:0006468
Gabi3229g00001 496 PRINTS Tyrosine kinase catalytic domain signature 372 394 IPR001245 GO:0004672|GO:0006468
Gabi3229g00001 496 PRINTS Tyrosine kinase catalytic domain signature 269 282 IPR001245 GO:0004672|GO:0006468
Gabi3229g00001 496 PRINTS Tyrosine kinase catalytic domain signature 416 438 IPR001245 GO:0004672|GO:0006468
Gabi3229g00001 496 SMART serkin_6 189 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3229g00001 496 MobiDBLite consensus disorder prediction 49 92 - -
Gabi3229g00001 496 CDD STKc_MAP3K-like 198 445 - -
Gabi3229g00001 496 MobiDBLite consensus disorder prediction 37 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3229g00001 Gabi-Chr3229 20578 24277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3229g00001 1 496 MAP Kinase Kinase Kinase AT5G58950 57.008 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi3229g00001 PK_Tyr_Ser-Thr 3.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3229g00001 - - gmx:100784454 823.157