Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3228g00001 ATGACTCTGGAGAACTATTTGATAGATGAAGATGGGGTTGGAGACCATTTTCCAGTGGGTATGCGTGTTTTGCTTGTTGATGATGATCAACTTTGTCTCAAAGTGTTAGGGAACATGCTTCGCAAATGCCAGTATCAGGTTACTACAACTATTCAGTCAATTAAGGCATTAGATATGTTGAGGACAAATAGAAATATGTTTGACCTCGTCATTACTGGCGTAAATATGCCACACATGGATGGACTTAAGCTACTAGAGATAGTGGGACATGAAATGGACATACCTGTCATAATGTTGTCAGAATTGAGTGATATAGAGTACGTGAAGAAAAGTGTTATACTTGGCGCATGTGACTATATAATTAAACCTCCTCGAATCCAAGTACTGCAGAATATATGGCAACATATAGCGCGAAGAAAGATTGATTGCAAAGGTCAAATTACGCACTTCAATGAGGAGAAAGCATGCAATATAGCTAGGGAAGGTAGTCAAAGCATCACATTAGAAAGTAATGCTGACCATAATCAAATGCATGGTAAGAAAAGGAAGGAACCGTGTGTGGAAGAAGAAAATGGTGAAATGAATGCAAAAGAGAATGAGGAACCTTCAAATCAAAAGAAGCCTCGTTTAAATTGGAATGATGACTTGCAAAGAAAATTTCTTGCTGCAGTCAATTCACTGGGCATTGATAGTGAGTTTACATGCCTGTTAAATACAAACTTGGCTGCCTCAAGAAGACCTCAACAAGCTTGCATGGTTGCTGCGTCACGTTGTAGTGATTCTTACGTGCAAATGAATTCAATAGATAGATATGGAAATTTTGACACCTTATTTGGATCAAGAAGAATCGGTCCCTCTGCACCGGTCCAATCTATTGAGACACAAAATATAAACAACTCCAGAAACATCCAGCCGTGCATGTTTTCTGCAAATCAAAGCTCAAGTTTATCACAGGGAATTCCAAACTCAATCGAGTTTAACCAATTTCAGCAGAGCAACTGTATAACTAGTTTTGAGCAGTTTAGTTCAATTGATGGGTCAAATGGATATGTGGTTTCCTCTAACTTTCCTGGCTCAATCACCCAATCCACAAAAGTTGATAAATCCTATTTAGATGCAGGAATGAAGTCAAATGATGCCTACATTTTGCAGCCCCAAGAAGAACTCACCGAGGAGGATATTTTTGGTACTTTACATGACATAGTGAGTGATATTGGTTAA 1221 0.3857 MTLENYLIDEDGVGDHFPVGMRVLLVDDDQLCLKVLGNMLRKCQYQVTTTIQSIKALDMLRTNRNMFDLVITGVNMPHMDGLKLLEIVGHEMDIPVIMLSELSDIEYVKKSVILGACDYIIKPPRIQVLQNIWQHIARRKIDCKGQITHFNEEKACNIAREGSQSITLESNADHNQMHGKKRKEPCVEEENGEMNAKENEEPSNQKKPRLNWNDDLQRKFLAAVNSLGIDSEFTCLLNTNLAASRRPQQACMVAASRCSDSYVQMNSIDRYGNFDTLFGSRRIGPSAPVQSIETQNINNSRNIQPCMFSANQSSSLSQGIPNSIEFNQFQQSNCITSFEQFSSIDGSNGYVVSSNFPGSITQSTKVDKSYLDAGMKSNDAYILQPQEELTEEDIFGTLHDIVSDIG 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3228g00001 406 MobiDBLite consensus disorder prediction 174 210 - -
Gabi3228g00001 406 MobiDBLite consensus disorder prediction 167 210 - -
Gabi3228g00001 406 Gene3D - 203 260 - -
Gabi3228g00001 406 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Gabi3228g00001 406 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 288 IPR045279 GO:0009736
Gabi3228g00001 406 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Gabi3228g00001 406 SUPERFAMILY CheY-like 20 142 IPR011006 -
Gabi3228g00001 406 SMART REC_2 21 133 IPR001789 GO:0000160
Gabi3228g00001 406 CDD REC_typeB_ARR-like 23 137 - -
Gabi3228g00001 406 Gene3D - 20 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3228g00001 Gabi-Chr3228 1300 7527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3228g00001 15 333 Response Regulator Gene Family AT2G25180 39.037 2.73e-60 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3228g00001 Response_reg 8.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3228g00001 K14491 - gmx:100776075 341.273