Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3227g00002 ATGGATTTCAAAAGCTGCAAAAATTTGTTGTATGTTTTTATTATCTTGAGTTGTTATATTTTAGATGTTGATGGTATTGCCAAAGACAGCATCACATCACATAAATTCATCAAGGACCCTGAAACTCTTAGCTCCAATAGTGGAAACTTCACCTTGGGGTTCTTCAGCACTGACTCTACAAATCGCTATGTAGGAATTTGGTGGAAGTCCAACCTCACTGTCACATGGGTGGCTAATAGAAATCAACCATTGAATGATTCTTCTGGGGTTGTTACAATATCTGAAGATGGCAATCTTGTGGTATTGAATGGAAACAAACAGGTTCTTTGGTCATCAAATGTGTCCAATATTGCATCCAATTCTACTTCCCAACTTTCAGATTATGGAAGCCTTCTCTTGCTGGATAACACAACAGGAAACACCATATGGGATAGCTTCAACCATCCTTCAAATACTTGGTTACCCCATATGAAAATTACAAGCAACAAAATAACAGGTAAGAAAGTAGAACTTACATCATGGAAAAGCCTTTCTGATCCATCCATTGGAAGCTTTTCTTTCAGTGTTGAACGCCTAAAGATTCCTGAACTGTTCATTCTGAATGGAACTCAACCATACTGGCGCAGTGGTCCATGGAATGGTCAGGTTTTTATAGGGGTATTAAACATGGGAACTGCGTATCTGAATGGTATTAAAGTTGAAGATGATGGGAATGGAACAATTGAAATATCTTTCACAGCATATGGGATGGGACTCGTAATGCTTACCTTGAATCCCCAAGGCCAATATGTGCAAAATAATTGGGATGACGAGAAGGAGCAATGGCAAGTTACATGGACAAGTCACCAATCAGATTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGCTGTAGCTCACAGGGCTCACCAATATGTAGCTGTTTGAAAGGGTTTGAGCCAAGGAACAAAGAGGAATGGAATAGACAAAACTGGACTCGTGCATGTGTTAGAAGCACACCTCTGCAATGTGAAAGGACCAACAATCAAAACACAAGTGTGGACAGTAATAAAGCAGATGGGTTTTTGACATTGCAGATGATCAAAGTTCCTGATTTTGCACAAGGGTCATCTGTTACACAAGACACATGCAGAAGCGGGTGCTTGGAGAATTGCTCTTGCATTGCATATGCATATGATAATGCAATTGGCTGTATGTCTTGGAATAGGGATCTAATTGATATACAACAATTCTCAAGTGGAGGAATTGATCTTTACGTTCGTGTAGCCTATACAGAACTTGACAAAGGACGAAACAAAAAAGTCATCATTACAGTTACAGTGATAATAGGAACTTTCCTGATTTTCACTTGTGCATATGTCATTTGGAGGAGGAAAAAGAAGAACAGTGGATTTAATCGATTTAAAACAGGTGAAATATCTGAATCTAAAGAACACACAAACGACAAAGTAATTGGAAAATTATCACAAGCTAAGCTACAGGAGCTATTACAATTTAGCTTTGAAAAGCTTGCAACTGCCACAAATTACTTCCACTCATCCAACAAACTTGGGCAGGGTGGTTTTGGTGCAGTATACAAGGGGAAACTGCAAGATGGTAAGGAAATAGCGGTTAAAAGACTTTCTAGAGCATCTGGACAAGGACTAGAAGAATTCATGAATGAAGTTTTGGTAATATCTAAGCTTCAACACCGCAATCTAGTAAAACTTCTTGGCTGCTGTATTGAAGGAGAAGAAAAGATGCTAATATATGAGTACATGCCAAATAGAAGTTTGGATGCGTATGTGTTTGATTGGAGAAAGCTCTTTAGCATAATAGAAGGAATAGCTAGAGGATTGCTTTATCTCCACAGAGATTCCAGGCTAAAAATCATACATAGAGATTTGAAGGCAAGTAATATCTTGCTAGATGAGGAACTAAATCCAAAAATATCAGACTTTGGTATGGCAAGAATCTTTGGAGGCAGTGAAGATCAGGGCAATACCCAAAGGGTTGTGGGAACATATGGTTATATGTCCCCTGAATATGCAATGCAAGGAGTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTACTTGAGATTGTTAGTGCAAGAAGAAACTCAAGTTTGTATGACAATGACAATTCTCTTACCCTCTTGGGACTTGTCTGGATACAATGGAAGGAAGAAGATGTTATATCTTTAGTAGATCCAGGAATATATGATCCTAGCCTTGAAAAGCATATTATAAGGTGCATACACATAGGACTTTTGTGTGTACAAGAATTTGCTGCGGACAGGCCTAATATGGCTGCAGTAATTTCTATGCTCAACAGTGAGATTGTGGATCTTCCTCCTCCAAGGCAACCTGCATTCATCCTGAGGCAGAATATGCTTAGTTCATTATCCTCTGATGAAAGCCTTAGATTGCACTCCATCAACAATGTCAGTATTACAGACATCCACGGCAGATAG 2466 0.3889 MDFKSCKNLLYVFIILSCYILDVDGIAKDSITSHKFIKDPETLSSNSGNFTLGFFSTDSTNRYVGIWWKSNLTVTWVANRNQPLNDSSGVVTISEDGNLVVLNGNKQVLWSSNVSNIASNSTSQLSDYGSLLLLDNTTGNTIWDSFNHPSNTWLPHMKITSNKITGKKVELTSWKSLSDPSIGSFSFSVERLKIPELFILNGTQPYWRSGPWNGQVFIGVLNMGTAYLNGIKVEDDGNGTIEISFTAYGMGLVMLTLNPQGQYVQNNWDDEKEQWQVTWTSHQSDCDVYGICGAFASCSSQGSPICSCLKGFEPRNKEEWNRQNWTRACVRSTPLQCERTNNQNTSVDSNKADGFLTLQMIKVPDFAQGSSVTQDTCRSGCLENCSCIAYAYDNAIGCMSWNRDLIDIQQFSSGGIDLYVRVAYTELDKGRNKKVIITVTVIIGTFLIFTCAYVIWRRKKKNSGFNRFKTGEISESKEHTNDKVIGKLSQAKLQELLQFSFEKLATATNYFHSSNKLGQGGFGAVYKGKLQDGKEIAVKRLSRASGQGLEEFMNEVLVISKLQHRNLVKLLGCCIEGEEKMLIYEYMPNRSLDAYVFDWRKLFSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGSEDQGNTQRVVGTYGYMSPEYAMQGVFSEKSDVFSFGVLLLEIVSARRNSSLYDNDNSLTLLGLVWIQWKEEDVISLVDPGIYDPSLEKHIIRCIHIGLLCVQEFAADRPNMAAVISMLNSEIVDLPPPRQPAFILRQNMLSSLSSDESLRLHSINNVSITDIHGR 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3227g00002 821 SUPERFAMILY Protein kinase-like (PK-like) 494 787 IPR011009 -
Gabi3227g00002 821 SMART serkin_6 511 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3227g00002 821 Gene3D Phosphorylase Kinase; domain 1 470 586 - -
Gabi3227g00002 821 Pfam D-mannose binding lectin 73 175 IPR001480 -
Gabi3227g00002 821 PIRSF SRK 2 821 IPR024171 GO:0004674
Gabi3227g00002 821 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Gabi3227g00002 821 CDD PAN_AP_plant 333 423 - -
Gabi3227g00002 821 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Gabi3227g00002 821 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544
Gabi3227g00002 821 SMART ntp_6 350 422 IPR003609 -
Gabi3227g00002 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 586 - -
Gabi3227g00002 821 ProSiteProfiles Bulb-type lectin domain profile. 28 146 IPR001480 -
Gabi3227g00002 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 587 782 - -
Gabi3227g00002 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Gabi3227g00002 821 Pfam Protein tyrosine and serine/threonine kinase 513 774 IPR001245 GO:0004672|GO:0006468
Gabi3227g00002 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 146 - -
Gabi3227g00002 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 214 IPR036426 -
Gabi3227g00002 821 SMART blect_4 34 149 IPR001480 -
Gabi3227g00002 821 CDD STKc_IRAK 517 775 - -
Gabi3227g00002 821 Pfam Domain of unknown function (DUF3403) 776 821 IPR021820 GO:0004674
Gabi3227g00002 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 765 - -
Gabi3227g00002 821 ProSiteProfiles Protein kinase domain profile. 511 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3227g00002 821 Coils Coil 818 821 - -
Gabi3227g00002 821 CDD B_lectin 37 149 IPR001480 -
Gabi3227g00002 821 ProSiteProfiles PAN/Apple domain profile. 337 423 IPR003609 -
Gabi3227g00002 821 Gene3D Transferase(Phosphotransferase) domain 1 587 780 - -
Gabi3227g00002 821 Gene3D - 24 147 IPR036426 -
Gabi3227g00002 821 Pfam PAN-like domain 350 408 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3227g00002 Gabi-Chr3227 33727 36856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3227g00002 425 792 Receptor kinase-like Gene Family AT4G05200 50.266 1.87e-121 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3227g00002 PK_Tyr_Ser-Thr 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3227g00002 - - gsj:114424251 1120.53