Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3227g00001 ATGGGTTTGAACAAGTTCACAAATTTGTTCTTCGTTTTGATCATAGTCTACTTTTATTTTTTAGATGTTGGTGTTGCCATAGTCACCATCACATCATCACAGTTCATCAAGGACCCTGCAACTCTAACCTCCAACGGTGGTAACTTCACCTTGGGCTTTTTCAGCCCTCAAAATTCTACAAATCGCTATGTGGGAATTTGGTGGCAACCAAAATTCACTGTCATATGGGTCGCTAACAGAAACCAACCACTGAATGATTCATCTGGGGTTGTAACAATATCTGAAGATGGCAACCTTGTGGTATTGAATGGACAGAAACAAGTTATTTGGTCATCAAATGTGTCCCATATTGTATCCAATTCTAGTTCTCAACTTCTAGATTCTGGGAACCTTGTACTGCAAGAAAGCTCAACAGGAAACAGCATATGGCAGAGTTTTGAGCATCCTTCAGATGCATTATTGGAGGGTATAAAACTCACAAGCAACAAAAGAACAAGTGAGAAAGTAAAACTCACATCATGGAAAAGCCCTTCCGATCCATCCACTGGAAGCTTCTCTTTAAGTGTTGAACGCCTTAGTATTCCTGAAGTGTTCATTTGGAATGAAACTAGACCATATTGGCGCTCTGGTCCTTGGAATGGTAGGATCTTTACTGGGATACCAGCAATGAAAGCTTTTTATCTAGGTGGTTTCCGTGTTGGTGATGATGGGCAAGGAAGAATTGTTCTCTCTGCTACAGAAGTTGATGAGGTTGGTTTCATAATCTATATCTTGAATTCTCAAGGAAATTTTCAAGAGAATTGGTGGGATAGAGTGAAGAAAGAATGGCAAGTAAGATGGAATAGTCATGACTTGGATTGTGATGTTTATGGTGTGTGTGGGCCTTTTGCAAGCTGTAATTCTCAGAGCTCACCAATATGCAGCTGTTTGAGAGGGTTTGAGCCAAAGAACATAGAGGAATGGAATAGAAAAAACTGGACTAGTGGATGTGTTAGGAGCACACCACTACAATGTGAAAGGACCAATAATCAAAACAAAAGTGTGGATAGTAATAAAGCAGATGGGTTTTTGCCATTGCAGATGATCAAAGTTCCTGATTTTGCAGATGGGTCATCTCTCACACTTACATCAGACACATGCAGAAGTCAGTGTTTGGAGAATTGCTCATGCATTGCATATTCATATGATGCTAATATTGGTTGTATGTCTTGGACTGAGAATCTAATAGACATACAGCAATTCTCAAATGGAGGACTTGATCTATATTTTCGTGTGGCCTACACAGAACTTGATAAAGGGAGAAACAAGACAGTCATCATTACTATAACAGTGACAATAGGAACTGCCATAATTGTCACTTGTGCATATATCATGTGGAGAAGGATTTCTAACCATCAAGCTAGGAAAAAGAACAGTGATGGAATCCTACAATTGAATAGAGGTGAATCACCTGCAGAATATACAAGTGCCAATGTAATCGGAGAACTATCACAAGTTAAGCTCCAGGAGCTATTAATATTTGATTTTGGAAAGCTTGCAACTGCCACAAACAACTTTCACCCATCCAAGAAACTTGGTCAGGGTGGTTTTGGTCCAGTACACAAGGGGGAACTGCAAGATGGTCAGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTAGACAAGGTCTAGAAGAATTCATGAATGAAGTAGCTGTGATTTCTAAGCTTCAACACCGCAATCTTGTAAAACTTCTTGGATGCTGTATTGAAGGAGAGGAAAAGATGTTGATATATGAGTACATGCCAAATAAAAGTTTGGATGCATTTATCTTTGATCCTTCAAAAAGTAAACTTCTTGATTGGAGAAAACGATTTAGCATAATAGAAGGAGTAGCACGAGGATTGCTTTATCTTCATAGAGATTCAAGGCTAAAAATCATACATAGAGATTTGAAGGCAAGTAATATCTTGCTAGATGAGGAGCTCAATCCAAAAATATCAGATTTTGGTATGGCTAGAATATTTGGAGGGAGTGAAGATCAGGCCAATACTAGAAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCAATGCAAGGAGTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTACTAGAGATTGTTAGCGGAAAACGAAACTCATGTTTCTATAACGATGATAATTCTCTGACCCTTTTAATATTTGCATGGATACAATGGACAGAAGACAACATTTTATCTCTAATTGATCAAGGAATATATGATCCTAGCCTTAATGAGCATATTATAAGGTCATTACACATAGGACTTTTGTGTGTACAAGAATTTGCTGCAGACAGGCCTAGTATGGCTGCTGTAATTTCTATGCTTAACAATGAGAATCTTGATCTTCCTTCTCCAAAGCAACCTGCGTACATACAGAATGTGTTGAGTTCAGGGTCCTCTGTAGCAAGCAATGGATTGTACTCCCTCAACACTGTTAGTGTTTCAGACATCAGTGGCAGATAG 2508 0.3872 MGLNKFTNLFFVLIIVYFYFLDVGVAIVTITSSQFIKDPATLTSNGGNFTLGFFSPQNSTNRYVGIWWQPKFTVIWVANRNQPLNDSSGVVTISEDGNLVVLNGQKQVIWSSNVSHIVSNSSSQLLDSGNLVLQESSTGNSIWQSFEHPSDALLEGIKLTSNKRTSEKVKLTSWKSPSDPSTGSFSLSVERLSIPEVFIWNETRPYWRSGPWNGRIFTGIPAMKAFYLGGFRVGDDGQGRIVLSATEVDEVGFIIYILNSQGNFQENWWDRVKKEWQVRWNSHDLDCDVYGVCGPFASCNSQSSPICSCLRGFEPKNIEEWNRKNWTSGCVRSTPLQCERTNNQNKSVDSNKADGFLPLQMIKVPDFADGSSLTLTSDTCRSQCLENCSCIAYSYDANIGCMSWTENLIDIQQFSNGGLDLYFRVAYTELDKGRNKTVIITITVTIGTAIIVTCAYIMWRRISNHQARKKNSDGILQLNRGESPAEYTSANVIGELSQVKLQELLIFDFGKLATATNNFHPSKKLGQGGFGPVHKGELQDGQEIAVKRLSRASRQGLEEFMNEVAVISKLQHRNLVKLLGCCIEGEEKMLIYEYMPNKSLDAFIFDPSKSKLLDWRKRFSIIEGVARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGSEDQANTRRVVGTYGYMSPEYAMQGVFSEKSDVFSFGVLLLEIVSGKRNSCFYNDDNSLTLLIFAWIQWTEDNILSLIDQGIYDPSLNEHIIRSLHIGLLCVQEFAADRPSMAAVISMLNNENLDLPSPKQPAYIQNVLSSGSSVASNGLYSLNTVSVSDISGR 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3227g00001 835 Pfam PAN-like domain 351 411 IPR003609 -
Gabi3227g00001 835 Pfam S-locus glycoprotein domain 207 317 IPR000858 GO:0048544
Gabi3227g00001 835 SMART ntp_6 351 425 IPR003609 -
Gabi3227g00001 835 SUPERFAMILY Protein kinase-like (PK-like) 507 810 IPR011009 -
Gabi3227g00001 835 SMART blect_4 33 149 IPR001480 -
Gabi3227g00001 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Gabi3227g00001 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Gabi3227g00001 835 Gene3D Transferase(Phosphotransferase) domain 1 595 800 - -
Gabi3227g00001 835 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Gabi3227g00001 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 213 IPR036426 -
Gabi3227g00001 835 PIRSF SRK 3 835 IPR024171 GO:0004674
Gabi3227g00001 835 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 782 - -
Gabi3227g00001 835 Gene3D Phosphorylase Kinase; domain 1 494 594 - -
Gabi3227g00001 835 Pfam D-mannose binding lectin 73 175 IPR001480 -
Gabi3227g00001 835 CDD STKc_IRAK 525 792 - -
Gabi3227g00001 835 CDD B_lectin 33 149 IPR001480 -
Gabi3227g00001 835 FunFam receptor-like serine/threonine-protein kinase SD1-8 493 594 - -
Gabi3227g00001 835 SMART serkin_6 519 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3227g00001 835 ProSiteProfiles PAN/Apple domain profile. 338 426 IPR003609 -
Gabi3227g00001 835 Pfam Protein tyrosine and serine/threonine kinase 522 790 IPR001245 GO:0004672|GO:0006468
Gabi3227g00001 835 ProSiteProfiles Protein kinase domain profile. 519 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3227g00001 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 595 798 - -
Gabi3227g00001 835 Gene3D - 25 146 IPR036426 -
Gabi3227g00001 835 CDD PAN_AP_plant 334 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3227g00001 Gabi-Chr3227 26314 29617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3227g00001 428 820 Receptor kinase-like Gene Family AT4G05200 48.371 3.28e-126 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3227g00001 PK_Tyr_Ser-Thr 5.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3227g00001 - - mtr:25498365 1136.71