Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00061 ATGCTACTTCGTGCTTGCACTGCAAACCTCCTTTGGTCTCTGCACGCCGTTTTCAACACCCATCAGTCTCATCGTCTTCACCCATTTCCCATTTGCCTCAAGTTCTATTCTTTGGCCCCACCCCAGGTTTATGGCCACTTGGTCGACAATTGTAGCGATTTTTTGCCATGGTTGGAGCGGAAAGCTGGTTCTAGGATTTCGTCATCGCTATCGATTGGGAATTCTTCATACGGAAGGTCTCTGTTTGCTTCTAAGATAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTTCAGTGCGCAAATAACTGTGGATAATCTCCTTCCTGAAATCAGAGCTTTAATCGCCGAGGAAGTTGGAAATATTGCGAAACTTGCCATTATTATTCTAATTGAGCAGAAATTGGGTCAGGGCTCTGAGTGGGATCCTTATATCAGCTGTCTTCCACGGCAGGGAGAGCTGCATAATACGATATTTTGGAATGAAAGTGAGTTGGAGATGATTCATCAAAGTTCAGTTTATCAGGAAACTATTAACCAAAAGTCTCAAATTGAAAAGGACTTTTCGGCAATCAGCCCTGTTTTTGAATGTTTCTGTCAAAGTCTTGGAGATTTTACTTACAAGGACTTCATGCATGCTTGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAAGGGTTTATCTCTGATTCCATTTGCAGATTTTTTAAACCATGATGGGATTTCAGAAGCAATTGTAATGAGTGACGAGGACAAACAATGCTCAGAAGTTACGGCAGATCGTAACTATACTCCTGGTGAACAGGTACTAATAAGTTATGGAAAGTTTTCAAATGCTACATTGATGCTGGACTTTGGTTTTACAATTCCGCAAAACATTTATGATCAGGTTCAGATCCAGTTTGATATACCTAAGCATGATCCACTGCATGACATGAAGTTGGAACTCTTGCAGCAAAACTCTGTGCCTCCAAACAGAGATATGAAGGACTTGAAGTACTCTGTGAATTCCTTCACAATCAAGGAAGTGAGGTCTGCTAGGGGAAAAGGAAAGGGTCTTCCACAATCACTTCGTGCACTTGCTCGTGTTCTTTCTTGTACCACTCCTCAGGAACTTAACGATTTGATGATGGAAGCTGCACAAAATGATGGTCGGATGGCTAGACGCCCTCTACAGGATATCAACAAAGAGATTCAAGCACACATGATGTTGTCATCATTTTTCACTCAATTAATTGAGGAGCGCAATGCAACTATTATGGCATTGGATTCTTGTAATTCTCCCTCCATGTGTGAAAGAGTTGCTGTTAGAAGACTAATGGCTCGTGATCTCCTACATGGTGAGCTTCGCATTCTCAAATCCGCTTCTGCCTGGTTGGACAACTACTGCTTTTCCTTGATTTGA 1407 0.42 MLLRACTANLLWSLHAVFNTHQSHRLHPFPICLKFYSLAPPQVYGHLVDNCSDFLPWLERKAGSRISSSLSIGNSSYGRSLFASKIIQTGDCILKVPFSAQITVDNLLPEIRALIAEEVGNIAKLAIIILIEQKLGQGSEWDPYISCLPRQGELHNTIFWNESELEMIHQSSVYQETINQKSQIEKDFSAISPVFECFCQSLGDFTYKDFMHACTLVGSRAWGSTKGLSLIPFADFLNHDGISEAIVMSDEDKQCSEVTADRNYTPGEQVLISYGKFSNATLMLDFGFTIPQNIYDQVQIQFDIPKHDPLHDMKLELLQQNSVPPNRDMKDLKYSVNSFTIKEVRSARGKGKGLPQSLRALARVLSCTTPQELNDLMMEAAQNDGRMARRPLQDINKEIQAHMMLSSFFTQLIEERNATIMALDSCNSPSMCERVAVRRLMARDLLHGELRILKSASAWLDNYCFSLI 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00061 468 ProSiteProfiles SET domain profile. 64 275 IPR001214 GO:0005515
Gabi3225g00061 468 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 47 288 - -
Gabi3225g00061 468 Pfam SET domain 78 275 IPR001214 GO:0005515
Gabi3225g00061 468 Pfam Rubisco LSMT substrate-binding 306 453 IPR015353 -
Gabi3225g00061 468 FunFam Predicted protein 291 466 - -
Gabi3225g00061 468 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 49 403 - -
Gabi3225g00061 468 SUPERFAMILY SET domain 50 293 IPR046341 -
Gabi3225g00061 468 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 300 462 IPR036464 -
Gabi3225g00061 468 Gene3D - 290 463 IPR036464 -
Gabi3225g00061 468 Gene3D set domain protein methyltransferase, domain 1 47 288 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3225g00061 SET 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00061 K19199 - gmx:100818002 679.093