Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00048 ATGTCATCTCGCATTGTAGCGGAGAATGCATTACCCATCACTGACTCGACGCCGTATTTGGACCTAATGGAACTTAACGACTTCACGCGCCGCCCTATAGCCGGCGAGTCTCCCACGTTAGGACAGCTCCTCAAGCACGTTGGAGATGTACGGAAGGAAGCCGCCGGCGACGGCAGCGAGACGCCGGTGCACCACGCTCTCGACGTCAGCGACGCCACCGGAATCGAGTCTCGCTCGCTACCATTTGTCCTGTCTTTCAACAACCTCACTTATAGTGTCAAGGTCCGCAGTAAATTGAGCTTCTCCTCAATCTTCTCCCGCCGCCGCAACAGCAGCTTCGGCGCGGCGGCGGTGGCGGAGGTTCCGGCGGTTGGCGAGAGCATGTTCACGCGGACCAAGACTCTTCTGAATGACATCTCCGGCGAAGCACGCGACGGCGAGATCATGGCGGTCCTCGGAGCCAGCGGTTCGGGAAAGTCGACTCTGATCGACGCGCTGGCGAACAGAATCGCGAAGGGAAAATTGAAAGGAACGGTGGCGCTGAACGGCGAGGCATTGGGATCGCGGATGGTGAAGGTGATATCGGCGTACGTGATGCAAGACGATCTTCTCTTCCCGATGCTCACTGTTGAAGAGACACTGACGTTCGCAGCCGAATTCCGATTACCACGCTCGCTATCCAAATCAAAGAAGAAGACACGCGTCCAAGCCCTAATCGATCAGCTTGGGCTCCGGAACGCAGCGAAAACAGTGATCGGCGACGAAGGCCACCGCGGAGTCTCCGGCGGAGAACGGCGACGAGTTTCAATCGGCATTGACATAATTCACGACCCGATCATGTTGTTCCTGGACGAGCCAACCTCGGGGCTGGACTCTACGAGCGCGTTCATGGTGGTGAAGGTGCTGCAGAGAATCGCACAGAGCGGAAGCATTGTGATCATGTCCGTTCACCAGCCAAGTTACAGAATCCTCGGGCTTCTCGATCGTATGATCTTCCTGTCACGCGGCCAAACTGTGTACAGCGGTTCGCCGTCGCAGTTACCGTCGTTCTTCGCCGAGTTCGGTCATCCGATACCGGAGAACGAGAACCGAACAGAGTTCGCGTTGGACCTGATTCGCGAGCTGGAAGGTTCACCGGGCGGAACGAAGAGCTTGGTGGAGTTCAACAAGTCATGGCAGAGCATGACGAAGCATCACCAACAACTTTCTTCAGGTAATAATGACGCTGAACCAAACGGCTTGTCGTTGAAAGAAGCAATCAGCGCGAGTATTTCGAGAGGGAAATTGGTGTCTGGAGCCACCAACACGAACGCGAACCCTTCTTCAATGGTGCCAAGGTTTGCGAACCCGTTTTGGATTGAGATGGCAACGCTGTCGAAACGTTCGGTCACGAATTCGAGGAGAATGCCTGAGTTGTTTGGGATAAGGTTGGGTGCGGTTATGGTGACTGGGTTCATTCTTGCCACCATGTTTTGGCAACTTGATAACTCTCCAAAAGGGGTGCAAGAAAGGCTTGGCTTTTTCGCATTTGCCATGTCAACAACCTTCTACACAACAGCTGATGCACTCCCCGTGTTCCTCCAAGAACGCTACATTTTCATGAGGGAAACTTCTCACAATGCTTATCGCAGATCATCCTATTTGGTCTCTCATGCTCTTGTTGCGTTGCCTTCGTTGGCTTTTCTCTCATTGGGTTTTGCTGCCACCACTTTCTGGGCTGTGGGACTTGACGGTGGAGTTTCGGGGTTCTTCTTTTACTTTCTCATAATATTTGCTTCCTTCTGGGCTGGGAACTCCTTTGTCACCTTCCTTTCTGGTGTGGTGCCTCATGTGATGCTGGGTTACACCATTGTTGTTGCAATTCTTGCGTATTTCTTGCTGTTCAGTGGGTTCTTCATCAACAGGGATAGGATCCCAATTTACTGGATTTGGTTCCACTACTTGTCGCTGGTCAAGTACCCTTACGAAGCTGTTCTGCAGAACGAGTTTAGTGACCCAATGAAGTGCTTTGTGAGAGGGGTGCAGATTTTCGACAACACACCACTGGGTTCCGTGCCAGATGCCCTCAAGTTGAAGCTGTTGGATAGCATGAGCAACACTCTGGGAATGAAGATCACGAGCTCAACGTGTTTGACGACGGGTACTGATATATTGAAGCAGAATGGGGTGACAGATTTGAGCAAGTGGAACTGTTTGTGGATCACAGTGGCTTGGGGTTTCTTCTTCAGGTTTCTCTTCTACTTGTCTTTGTTGGTCGGCAGCAAGAACAAGAGGAGGTGA 2280 0.5246 MSSRIVAENALPITDSTPYLDLMELNDFTRRPIAGESPTLGQLLKHVGDVRKEAAGDGSETPVHHALDVSDATGIESRSLPFVLSFNNLTYSVKVRSKLSFSSIFSRRRNSSFGAAAVAEVPAVGESMFTRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGKLKGTVALNGEALGSRMVKVISAYVMQDDLLFPMLTVEETLTFAAEFRLPRSLSKSKKKTRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIMLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRMIFLSRGQTVYSGSPSQLPSFFAEFGHPIPENENRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKHHQQLSSGNNDAEPNGLSLKEAISASISRGKLVSGATNTNANPSSMVPRFANPFWIEMATLSKRSVTNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETSHNAYRRSSYLVSHALVALPSLAFLSLGFAATTFWAVGLDGGVSGFFFYFLIIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPIYWIWFHYLSLVKYPYEAVLQNEFSDPMKCFVRGVQIFDNTPLGSVPDALKLKLLDSMSNTLGMKITSSTCLTTGTDILKQNGVTDLSKWNCLWITVAWGFFFRFLFYLSLLVGSKNKRR 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00048 759 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 68 747 - -
Gabi3225g00048 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 351 IPR027417 -
Gabi3225g00048 759 ProSitePatterns ABC transporters family signature. 260 274 IPR017871 GO:0005524|GO:0016887
Gabi3225g00048 759 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 119 360 IPR003439 GO:0005524
Gabi3225g00048 759 Pfam ABC-2 type transporter 457 663 IPR013525 GO:0016020|GO:0140359
Gabi3225g00048 759 Gene3D - 126 351 IPR027417 -
Gabi3225g00048 759 Pfam ABC transporter 136 288 IPR003439 GO:0005524
Gabi3225g00048 759 SMART AAA_5 145 337 IPR003593 GO:0016887
Gabi3225g00048 759 FunFam ABC transporter G family member 6 125 351 - -
Gabi3225g00048 759 Pfam ABC-2 type transporter 317 374 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3225g00048 Gabi-Chr3225 386814 389093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00048 135 347 Calmodulin-binding Proteins AT2G36910 27.727 1.11e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00048 K05681 - gmx:100803658 1264.6