Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00040 ATGTTTTGGTTGATTTTTATTACATGTCTTATTGGGATAACTTCAGCTCAGTTATCCAATAATTTCTATGATAAAACATGCCCTCAAGCCCTTATCACCATTAAAAAAGCAGTGGTCGATGCTGTGGCCAACGAGAGTCGCATGGGGGCATCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTTCAAGGATGTGATGCATCAGTATTGTTGGACGACACGGCAAATTTCACAGGGGAGAAGAATTCTTTTCCCAACGCTAATTCCATTAGGGGTCTTGACGTGATAGACAACATAAAAACTCAATTGGAGAGCTCTTGCCCTGGTGTTGTATCTTGTGCTGACATCGTAGCTGTTGCTGCCAGAGAGGGTGTTGCTGCTCTTGGTGGACAAAGATGGGACTTACAATTAGGCAGAAGAGATTCAACAACAGCAAGTTTAGAAGAATCTAATTCAGACTTACCTGCTCCCTTTTTGGATCTTAGTGGCCTTATCACTGCTTTCGCCAAGAAAAATTTCACAACCAAAGAAATGGTCACTTTATCAGGGGCTCACACAGTGGGGCTAGTGAGGTGCAGTCTATTCAGAGCTAGGATTTATAATGAGACCAACATAGATCCTTCATTTGCAGCAGCAATGCAAAAAGTTTGTCCCTTTGAAGGTGGTGATAACAATTTTTCTCCTTTCGATTCAACCACTCCATTCATATTTGACAATGCTTACTACCAGAACTTAGTGAGGAAAAGGGGTCTTATACACTCGGACCAACAACTGTTCGTGAATGGATCAGGACCAACAGATTCTCAAGTAGTTACATATAGCAGAGACATTGCAAGTTTCGGAAAAGACTTTGCAAACGCAATGATAAAGATGAGCATGCTTAGCCCATTAACTGGCTCCGACGGTCAGATCAGGCAAAACTGCAGGGTTGTCAATCCATGA 942 0.4246 MFWLIFITCLIGITSAQLSNNFYDKTCPQALITIKKAVVDAVANESRMGASLLRLHFHDCFVQGCDASVLLDDTANFTGEKNSFPNANSIRGLDVIDNIKTQLESSCPGVVSCADIVAVAAREGVAALGGQRWDLQLGRRDSTTASLEESNSDLPAPFLDLSGLITAFAKKNFTTKEMVTLSGAHTVGLVRCSLFRARIYNETNIDPSFAAAMQKVCPFEGGDNNFSPFDSTTPFIFDNAYYQNLVRKRGLIHSDQQLFVNGSGPTDSQVVTYSRDIASFGKDFANAMIKMSMLSPLTGSDGQIRQNCRVVNP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00040 313 PRINTS Plant peroxidase signature 228 243 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Plant peroxidase signature 129 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Plant peroxidase signature 286 299 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Plant peroxidase signature 91 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Plant peroxidase signature 176 188 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Plant peroxidase signature 244 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Plant peroxidase signature 51 71 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Plant peroxidase signature 27 46 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Plant peroxidase signature 110 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 FunFam Peroxidase 21 160 - -
Gabi3225g00040 313 FunFam Peroxidase 155 291 - -
Gabi3225g00040 313 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Haem peroxidase superfamily signature 230 245 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Haem peroxidase superfamily signature 111 128 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 PRINTS Haem peroxidase superfamily signature 49 63 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 Pfam Peroxidase 35 275 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 Gene3D - 21 309 - -
Gabi3225g00040 313 SUPERFAMILY Heme-dependent peroxidases 17 312 IPR010255 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 Gene3D Peroxidase, domain 2 155 291 - -
Gabi3225g00040 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 177 187 IPR019793 -
Gabi3225g00040 313 PANTHER PEROXIDASE 72-RELATED 13 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 CDD secretory_peroxidase 17 311 IPR033905 GO:0004601|GO:0042744
Gabi3225g00040 313 ProSiteProfiles Plant heme peroxidase family profile. 17 312 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi3225g00040 313 ProSitePatterns Peroxidases active site signature. 49 60 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3225g00040 Gabi-Chr3225 347349 349556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00040 13 312 Peroxidase AT5G05340 56.954 8.51e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00040 K00430 - gmx:100802244 503.056