Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00029 ATGGTGTCGTTGCTTCCATACGGCGATGTTGATTCCACCCTCAGGGCCATGGCCGGTCGTGCTGAGGGTTTCGGCCGCCACTCCATCGGTGGCCTCCACGGTTCTCTCTATATCGTCACCACCCTTGCAGATGATGGTCCTGGGTCCCTTCGGGATGGATGTAGGAGAACGGAGCCACTATGGATTGTTTTTGAAATTTCTGGTACAATTCATCTTTCATCATACCTGAGTGTGTCATCTTATAAGACAATAGATGGAAGGGGCCAGAGGATAAAATTTACTGGAAAGGGCTTAAGGTTGAAAGAATGTGAGCACATAATTATATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTCGATGGCATTCAAATAAAACCAAATTCTAAGCACATATGGATAGATAGATGCAGCCTTCGTGATTATGATGATGGGCTTATAGACATTACAAGACAAAGCACTGATATTACGATATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTAATTGGAGCTGACCCATCTCACGTTGGTGATAGATGCATCCGGGTGACAATTCATCATTGTTTCTTTGATGGAACGCGGCAAAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGGTAGTGTTGAGTCCCAGATATACTCACAGTGCAACATATATGAAGCAGGAGCTAAGAAAAAGACTTTTGAATTTTATACTGAGAAGGCCGCAGATAAGGAAGAGCAGAAGTCTGGCTTCATCATATCTGAAGGAGACATGTTTCTGAATGGTGCTCAGCCACTCTTACTAACAGAGTACAGAGATGAATCCATGTTCCATCCAAGTGAATATTACCCAACATGGACGATGGAAGCAGCTGCACATTCTCTCAGAGATATCCTCCAATTATGTACAGGTTGGCAATCCATTTGTAGACCAGTAGACTAA 984 0.437 MVSLLPYGDVDSTLRAMAGRAEGFGRHSIGGLHGSLYIVTTLADDGPGSLRDGCRRTEPLWIVFEISGTIHLSSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCGSVESQIYSQCNIYEAGAKKKTFEFYTEKAADKEEQKSGFIISEGDMFLNGAQPLLLTEYRDESMFHPSEYYPTWTMEAAAHSLRDILQLCTGWQSICRPVD 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00029 327 SUPERFAMILY Pectin lyase-like 18 298 IPR011050 -
Gabi3225g00029 327 PANTHER PECTATE LYASE 18-RELATED 10 283 IPR045032 GO:0030570
Gabi3225g00029 327 Pfam Pectate lyase 76 235 IPR002022 -
Gabi3225g00029 327 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Gabi3225g00029 327 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Gabi3225g00029 327 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Gabi3225g00029 327 SMART amb_all 32 245 IPR002022 -
Gabi3225g00029 327 Gene3D - 7 312 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3225g00029 Gabi-Chr3225 237138 240301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00029 42 327 Polysaccharide Lyase AT3G55140 80.769 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00029 K01728 - gmx:100802068 627.476