Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00028 ATGGTGTCGTTGCTTCCATACGGCGATGTTGATTCCACCCTCAGGGCCATGGCCGGTCGTGCTGAGGGTTTCGGCCGCCACTCCATCGGTGGCCTCCACGGTTCTCTCTATATCGTCACCACCCTTGCAGATGATGGTCCTGGGTCCCTTCGGGATGGATGTAGGAGAACGGAGCCACTATGGATTGTTTTTGAAATTTCTGGTACAATTCATCTTTCATCATACCTGAGTGTGTCATCTTATAAGACAATAGATGGAAGGGGCCAGAGGATAAAATTTACTGGAAAGGGCTTAAGGTTGAAAGAATGTGAGCACATAATTATATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTCGATGGCATTCAAATAAAACCAAATTCTAAGCACATATGGATAGATAGATGCAGCCTTCGTGATTATGATGATGGGCTTATAGACATTACAAGACAAAGCACTGATATTACGATATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTAATTGGAGCTGACCCATCTCACGTTGGTGATAGATGCATCCGGGTGACAATTCATCATTGTTTCTTTGATGGAACGCGGCAAAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGGTAGTGTTGAGTCCCAGTGCAACATATATGAAGCAGGAGCTAAGAAAAAGACTTTTGAATTTTATACTGAGAAGGCCGCAGATAAGGAAGAGCAGAAGTCTGGCTTCATCATATCTGAAGGAGACATGTTTCTGAATGGTGCTCAGCCACTCTTACTAACAGAGTACAGAGATGAATCCATGTTCCATCCAAGTGAATATTACCCAACATGGACGATGGAAGCAGCTGCACATTCTCTCAGAGATATCCTCCAATTATGTACAGGTTGGCAATCCATTTGTAGACCAGTAGACTAA 972 0.4383 MVSLLPYGDVDSTLRAMAGRAEGFGRHSIGGLHGSLYIVTTLADDGPGSLRDGCRRTEPLWIVFEISGTIHLSSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCGSVESQCNIYEAGAKKKTFEFYTEKAADKEEQKSGFIISEGDMFLNGAQPLLLTEYRDESMFHPSEYYPTWTMEAAAHSLRDILQLCTGWQSICRPVD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00028 323 PANTHER PECTATE LYASE 18-RELATED 10 279 IPR045032 GO:0030570
Gabi3225g00028 323 SMART amb_all 32 241 IPR002022 -
Gabi3225g00028 323 Pfam Pectate lyase 76 217 IPR002022 -
Gabi3225g00028 323 Gene3D - 7 308 IPR012334 -
Gabi3225g00028 323 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Gabi3225g00028 323 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Gabi3225g00028 323 SUPERFAMILY Pectin lyase-like 18 294 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3225g00028 Gabi-Chr3225 237138 240301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00028 42 323 Polysaccharide Lyase AT3G55140 80.420 4.98e-179 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00028 K01728 - gmx:100802068 613.994