Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00017 ATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTCATTCAGTCTGCTCTTAGTGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTAATAACATTAGCCACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTTCTCCATAGGCTTGCAGAGAATATTCAAGATGCATATGCTGAAGCAGCCAGTATTGCTGAACAGGCAGTTTCCTATATAAGGACCTTGTATGCATTTACAAATGAAACATTGGCTAAATATTCATATGCAACGTCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGCCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTGCAGCTCTGGGTTGGAAGGTTCTTGGTTATTCATGGGAAAGCTCATGGTGGTGAAATTATAACAGCTTTGTTTGCTGTGATTCTAAGTGGCTTGGGACTGAATCAAGCAGCGACAAATTTCTACTCATTTGATCAAGGGAGAATAGCTGCTTATAGACTTTTTGAGATGATAAGCCGGTCATCCTCATCTTTTAATCACGATGGCAGTGCTCTTGCTTCTGTGCAAGGAAATATTGAGTTTCGGAATGTTTATTTCAGCTATCTTTCTCGCCCTGAAATCCCTATCTTGAGTGGGTTTTATCTCACTGTTCCTGCCAAGAAAGCTGTGGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGGTTCTATGATCCAACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTTGAATGGCTGCGGAGTCAAATAGGACTTGTCACCCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGACACCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCGCATACCTTTATCAGCTCGTTAGATAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTTGCTTTGACAGAAGAGCAGAAAATAAAACTCTCTATTGCGAGAGCTGTACTTTTAAATCCATCAATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCCGTTCAGGAGGCTCTGGATCTTCTTATGTTGGGACGCTCAACCATAATAATTGCTCGAAGGCTTAGTCTTATAAGGAATGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAATTATTGACCCTGGATGGCTTATATGCAGAGCTCATTCGACATGAAGAGGCCACAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGCAGACTGCAGCTTTCCAAATTGAGAAAGATTCTTCAGAAAATCATAGTTTCAAAGAACCATCATCCCCTAGAATGATAAAATCACCCTCTCTTCAAAGAGTTTCTGCTGTATTTCGGCCTTCAGATGGCTTCTTTAACTCACAAGAATCACCAAAAGTTTTGAGCCCACCACCTGAGAAGATGATGGAAAATGGTCAGTCTTTGAATTCACCAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTACCGGAGTTACCCAAGATTGATGTTCAGTCTGTCCATCGACAAACATCAAAAGGTTCTGACCCAGAATCCCCTATTTCACCTCTTTTAACATCTGATCCTCAAAATGAACGCTCCCATTCACAAACTTTTAGTAGACCAGATAGTCATTCCGATGATTTTTCAGTGAAAATGGATGAAACAAAGGATGCACGTTATCAAGAACAACCCTCACTTTGGAGGCTGGCAGAGCTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCCTATATTATTGGCCTGGTGGTGACAGCTTATCATAGAATTGATGAAGCTCATCACTTACGAGGAGAGGTAGACAAGTGGTGCTTGATCATTGCCTGCATGGGTATCGTGACAGTTTTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGCTGGATGGTTTGATGAAGAGGACAACAGTGCTGACAATTTATCCATGCGCTTGGCCAATGATGCTACATTTGTGAGAGCGGCTTTTAGTAACCGACTTTCCATATTCATACAGGACAGTGCTGCAGTTAGTGTTGCTTTTCTCATTGGTGTTTTGCTGCACTGGCGAATAGCACTTGTGGCTTTAGCAACACTTCCAGTTCTCTGTGTTTCTGCCATTGCTCAGAAATTGTGGCTTGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACTGTAGTTGCATTCTGTGCCGGTAATAAAGTAATGGAACTTTACAGGCTGCAGTTAAATAAAATATTTAAGCAGAGCTTTCTTCATGGAGTTGCCATTGGTTTTGCGTTCGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCTCTTCTACTTTGGTACACTGCAACGTGTATTAAAAATAGTTATGTGGACCCACCTACTGCACTCAAGGAGTACATGGTTTTCTCATTCGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAGCGACGCAAATCTCTCATTTCAGTGTTTGAAATTATAGATCGCGTGCCTAAAATTGATCCTGATGATAGCTCAGCTTTGAGGCCACCCAATGTATATGGAAGCATTGAGTTGAAAAATGTTGATTTTTGTTATCCTTCTCGTCCAGAATTGTTGGTATTAAGCAATTTTAGTCTCAAAGTCAATGGGGGCCAAACAATTGCTGTTGTGGGAGTATCAGGGTCAGGAAAGAGCACTATAATATCTTTGATCGAGAGATTTTATGATCCAGTTGCTGGACAAGTTTTACTAGATGGGAGGGATTTAAAACTATATAATTTGAGATGGTTAAGAAGCCACCTTGGTCTGGTTCAGCAGGAACCTGTTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGGCATAATGCCAGTGAAGCTGAAATTAAAGAGGCTGCAAGAATAGCGAATGCTCATCATTTCATTAGTAACTTGCCTCATGGTTATGACACACACGTTGGGATGAGAGGTGTTGACTTAACTCCAGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTGTTGAAAAATGCTCCTATCTTGTTGTTGGATGAGGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACCACTATTCTAATAGCGCACAGGGCTGTGATGATGAGGCATGTGGACAACATAGTAGTTCTTAATGGAGGACGGATAGTGGAGGAGGGGACCCATGATTCATTGGTGGCGAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGGTTTGCGTCAGCATCGGCTTATTTAG 3687 0.4098 MSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSALASVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELIRHEEATKLPKRMPVRNYKQTAAFQIEKDSSENHSFKEPSSPRMIKSPSLQRVSAVFRPSDGFFNSQESPKVLSPPPEKMMENGQSLNSPDKEPSIRRQDSFEMRLPELPKIDVQSVHRQTSKGSDPESPISPLLTSDPQNERSHSQTFSRPDSHSDDFSVKMDETKDARYQEQPSLWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYIIGLVVTAYHRIDEAHHLRGEVDKWCLIIACMGIVTVFANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEAGWFDEEDNSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVSVAFLIGVLLHWRIALVALATLPVLCVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLNKIFKQSFLHGVAIGFAFGFSQFLLFACNALLLWYTATCIKNSYVDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALRPPNVYGSIELKNVDFCYPSRPELLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPVIFSTTIRENIIYARHNASEAEIKEAARIANAHHFISNLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAVMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKGLRQHRLI 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00017 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 969 1215 IPR027417 -
Gabi3225g00017 1228 Pfam ABC transporter 997 1145 IPR003439 GO:0005524
Gabi3225g00017 1228 SUPERFAMILY ABC transporter transmembrane region 643 964 IPR036640 GO:0005524|GO:0016020
Gabi3225g00017 1228 Gene3D - 222 469 IPR027417 -
Gabi3225g00017 1228 CDD ABC_6TM_Pgp_ABCB1_D2_like 651 962 - -
Gabi3225g00017 1228 Gene3D ABC transporter type 1, transmembrane domain 833 976 IPR036640 GO:0005524|GO:0016020
Gabi3225g00017 1228 Gene3D ABC transporter type 1, transmembrane domain 596 820 IPR036640 GO:0005524|GO:0016020
Gabi3225g00017 1228 FunFam ABC transporter B family member 20 969 1218 - -
Gabi3225g00017 1228 Pfam ABC transporter transmembrane region 1 182 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3225g00017 1228 Pfam ABC transporter transmembrane region 661 923 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3225g00017 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 466 IPR027417 -
Gabi3225g00017 1228 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 199 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3225g00017 1228 Pfam ABC transporter 253 397 IPR003439 GO:0005524
Gabi3225g00017 1228 Gene3D ABC transporter type 1, transmembrane domain 1 482 IPR036640 GO:0005524|GO:0016020
Gabi3225g00017 1228 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 656 948 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3225g00017 1228 FunFam ABC transporter B family member 6 596 824 - -
Gabi3225g00017 1228 PANTHER ABC TRANSPORTER B FAMILY 2 668 IPR039421 -
Gabi3225g00017 1228 SMART AAA_5 1006 1193 IPR003593 GO:0016887
Gabi3225g00017 1228 SMART AAA_5 259 438 IPR003593 GO:0016887
Gabi3225g00017 1228 SUPERFAMILY ABC transporter transmembrane region 1 211 IPR036640 GO:0005524|GO:0016020
Gabi3225g00017 1228 FunFam ABC transporter B family member 20 222 469 - -
Gabi3225g00017 1228 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 979 1216 IPR003439 GO:0005524
Gabi3225g00017 1228 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 207 - -
Gabi3225g00017 1228 Coils Coil 78 98 - -
Gabi3225g00017 1228 MobiDBLite consensus disorder prediction 557 571 - -
Gabi3225g00017 1228 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 232 467 IPR003439 GO:0005524
Gabi3225g00017 1228 MobiDBLite consensus disorder prediction 579 611 - -
Gabi3225g00017 1228 FunFam ABC transporter B family member 6 826 976 - -
Gabi3225g00017 1228 Gene3D - 977 1215 IPR027417 -
Gabi3225g00017 1228 MobiDBLite consensus disorder prediction 488 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3225g00017 Gabi-Chr3225 108931 118248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00017 1 525 Calmodulin-binding Proteins AT2G36910 45.849 2.84e-136 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00017 K05658 - gmx:100799399 2276.13