Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00016 ATGATGTCGAGGGGACTGTTCGGGTGGTCCCCACCTCACATACAGCCTCTCACGCCGGTTTCCGAGGTATCGGAGCCGCCTGAGTCGCCGTCGCCGTACCTGGACTTTGGCGCCGAGACCTCCGCGTCGCAGCAGGTTGAGGTCGAGGAGGAGATTGAGGAGCTCGAGGAGATTGAGCCGCCGCCCGCCGCGGCACCTTTCTCCCGCCTCTTTGCCTGCGCTGACTGCCTCGATTGGTTTCTCATGGTCGTCGGCTCCGTCGCCGCTGCCGCTCACGGCACCGCTCTCGTCGTTTACTTGCACTACTTTGCCAAAGTTATTCAGGTTCCTCAGCAAGGATCGCCGGAGGAGCAGTTTCACAGGTTCAAGGAGCTTGCTTTAACCATTGTTTATATTGCTGGGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTCTTACTGGAGAACGGCAGACCGCTGTCATCAGGTCAAAATATGTTCAAGTATTACTTAACCAAGAGATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTCATTCAGTCTGCTCTTAGTGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTAATAACATTAGCCACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTTCTCCATAGGCTTGCAGAGAATATTCAAGATGCATATGCTGAAGCAGCCAGTATTGCTGAACAGGCAGTTTCCTATATAAGGACCTTGTATGCATTTACAAATGAAACATTGGCTAAATATTCATATGCAACGTCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGCCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTGCAGCTCTGGGTTGGAAGGTTCTTGGTTATTCATGGGAAAGCTCATGGTGGTGAAATTATAACAGCTTTGTTTGCTGTGATTCTAAGTGGCTTGGGACTGAATCAAGCAGCGACAAATTTCTACTCATTTGATCAAGGGAGAATAGCTGCTTATAGACTTTTTGAGATGATAAGCCGGTCATCCTCATCTTTTAATCACGATGGCAGTGCTCTTGCTTCTGTGCAAGGAAATATTGAGTTTCGGAATGTTTATTTCAGCTATCTTTCTCGCCCTGAAATCCCTATCTTGAGTGGGTTTTATCTCACTGTTCCTGCCAAGAAAGCTGTGGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGGTTCTATGATCCAACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTTGAATGGCTGCGGAGTCAAATAGGACTTGTCACCCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGACACCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCGCATACCTTTATCAGCTCGTTAGATAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTTGCTTTGACAGAAGAGCAGAAAATAAAACTCTCTATTGCGAGAGCTGTACTTTTAAATCCATCAATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCCGTTCAGGAGGCTCTGGATCTTCTTATGTTGGGACGCTCAACCATAATAATTGCTCGAAGGCTTAGTCTTATAAGGAATGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAATTATTGACCCTGGATGGCTTATATGCAGAGCTCATTCGACATGAAGAGGCCACAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGCAGACTGCAGCTTTCCAAATTGAGAAAGATTCTTCAGAAAATCATAGTTTCAAAGAACCATCATCCCCTAGAATGATAAAATCACCCTCTCTTCAAAGAGTTTCTGCTGTATTTCGGCCTTCAGATGGCTTCTTTAACTCACAAGAATCACCAAAAGTTTTGAGCCCACCACCTGAGAAGATGATGGAAAATGGTCAGTCTTTGAATTCACCAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTACCGGAGTTACCCAAGATTGATGTTCAGTCTGTCCATCGACAAACATCAAAAGGTTCTGACCCAGAATCCCCTATTTCACCTCTTTTAACATCTGATCCTCAAAATGAACGCTCCCATTCACAAACTTTTAGTAGACCAGATAGTCATTCCGATGATTTTTCAGTGAAAATGGATGAAACAAAGGATGCACGTTATCAAGAACAACCCTCACTTTGGAGGCTGGCAGAGCTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCCTATATTATTGGCCTGGTGGTGACAGCTTATCATAGAATTGATGAAGCTCATCACTTACGAGGAGAGGTAGACAAGTGGTGCTTGATCATTGCCTGCATGGGTATCGTGACAGTTTTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGCTGGATGGTTTGATGAAGAGGACAACAGTGCTGACAATTTATCCATGCGCTTGGCCAATGATGCTACATTTGTGAGAGCGGCTTTTAGTAACCGACTTTCCATATTCATACAGGACAGTGCTGCAGTTAGTGTTGCTTTTCTCATTGGTGTTTTGCTGCACTGGCGAATAGCACTTGTGGCTTTAGCAACACTTCCAGTTCTCTGTGTTTCTGCCATTGCTCAGAAATTGTGGCTTGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACTGTAGTTGCATTCTGTGCCGGTAATAAAGTAATGGAACTTTACAGGCTGCAGTTAAATAAAATATTTAAGCAGAGCTTTCTTCATGGAGTTGCCATTGGTTTTGCGTTCGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCTCTTCTACTTTGGTACACTGCAACGTGTATTAAAAATAGTTATGTGGACCCACCTACTGCACTCAAGGAGTACATGGTTTTCTCATTCGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAGCGACGCAAATCTCTCATTTCAGTGTTTGAAATTATAGATCGCGTGCCTAAAATTGATCCTGATGATAGCTCAGCTTTGAGGCCACCCAATGTATATGGAAGCATTGAGTTGAAAAATGTTGATTTTTGTTATCCTTCTCGTCCAGAATTGTTGGTATTAAGCAATTTTAGTCTCAAAGTCAATGGGGGCCAAACAATTGCTGTTGTGGGAGTATCAGGGTCAGGAAAGAGCACTATAATATCTTTGATCGAGAGATTTTATGATCCAGTTGCTGGACAAGTTTTACTAGATGGGAGGGATTTAAAACTATATAATTTGAGATGGTTAAGAAGCCACCTTGGTCTGGTTCAGCAGGAACCTGTTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGGCATAATGCCAGTGAAGCTGAAATTAAAGAGGCTGCAAGAATAGCGAATGCTCATCATTTCATTAGTAACTTGCCTCATGGTTATGACACACACGTTGGGATGAGAGGTGTTGACTTAACTCCAGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTGTTGAAAAATGCTCCTATCTTGTTGTTGGATGAGGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACCACTATTCTAATAGCGCACAGGGCTGTGATGATGAGGCATGTGGACAACATAGTAGTTCTTAATGGAGGACGGATAGTGGAGGAGGGGACCCATGATTCATTGGTGGCGAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGGTTTGCGTCAGCATCGGCTTATTTAG 4197 0.4284 MMSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDFGAETSASQQVEVEEEIEELEEIEPPPAAAPFSRLFACADCLDWFLMVVGSVAAAAHGTALVVYLHYFAKVIQVPQQGSPEEQFHRFKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQEMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSALASVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELIRHEEATKLPKRMPVRNYKQTAAFQIEKDSSENHSFKEPSSPRMIKSPSLQRVSAVFRPSDGFFNSQESPKVLSPPPEKMMENGQSLNSPDKEPSIRRQDSFEMRLPELPKIDVQSVHRQTSKGSDPESPISPLLTSDPQNERSHSQTFSRPDSHSDDFSVKMDETKDARYQEQPSLWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYIIGLVVTAYHRIDEAHHLRGEVDKWCLIIACMGIVTVFANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEAGWFDEEDNSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVSVAFLIGVLLHWRIALVALATLPVLCVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLNKIFKQSFLHGVAIGFAFGFSQFLLFACNALLLWYTATCIKNSYVDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALRPPNVYGSIELKNVDFCYPSRPELLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPVIFSTTIRENIIYARHNASEAEIKEAARIANAHHFISNLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAVMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKGLRQHRLI 1398
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00016 1398 CDD ABC_6TM_Pgp_ABCB1_D2_like 821 1132 - -
Gabi3225g00016 1398 FunFam ABC transporter B family member 20 69 406 - -
Gabi3225g00016 1398 PANTHER ABC TRANSPORTER B FAMILY 47 838 IPR039421 -
Gabi3225g00016 1398 Pfam ABC transporter 423 567 IPR003439 GO:0005524
Gabi3225g00016 1398 Coils Coil 248 268 - -
Gabi3225g00016 1398 FunFam ABC transporter B family member 20 1139 1388 - -
Gabi3225g00016 1398 Gene3D - 1147 1385 IPR027417 -
Gabi3225g00016 1398 MobiDBLite consensus disorder prediction 727 741 - -
Gabi3225g00016 1398 SUPERFAMILY ABC transporter transmembrane region 813 1134 IPR036640 GO:0005524|GO:0016020
Gabi3225g00016 1398 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 83 369 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3225g00016 1398 MobiDBLite consensus disorder prediction 749 781 - -
Gabi3225g00016 1398 Pfam ABC transporter 1167 1315 IPR003439 GO:0005524
Gabi3225g00016 1398 Gene3D ABC transporter type 1, transmembrane domain 69 652 IPR036640 GO:0005524|GO:0016020
Gabi3225g00016 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1139 1385 IPR027417 -
Gabi3225g00016 1398 CDD ABC_6TM_Pgp_ABCB1_D1_like 82 377 - -
Gabi3225g00016 1398 FunFam ABC transporter B family member 6 766 994 - -
Gabi3225g00016 1398 Pfam ABC transporter transmembrane region 84 352 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3225g00016 1398 Pfam ABC transporter transmembrane region 831 1093 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3225g00016 1398 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1149 1386 IPR003439 GO:0005524
Gabi3225g00016 1398 MobiDBLite consensus disorder prediction 658 794 - -
Gabi3225g00016 1398 Gene3D - 392 639 IPR027417 -
Gabi3225g00016 1398 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 402 637 IPR003439 GO:0005524
Gabi3225g00016 1398 SMART AAA_5 429 608 IPR003593 GO:0016887
Gabi3225g00016 1398 SMART AAA_5 1176 1363 IPR003593 GO:0016887
Gabi3225g00016 1398 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 826 1118 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3225g00016 1398 FunFam ABC transporter B family member 6 996 1146 - -
Gabi3225g00016 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 636 IPR027417 -
Gabi3225g00016 1398 FunFam ABC transporter B family member 20 392 639 - -
Gabi3225g00016 1398 Gene3D ABC transporter type 1, transmembrane domain 1003 1146 IPR036640 GO:0005524|GO:0016020
Gabi3225g00016 1398 Gene3D ABC transporter type 1, transmembrane domain 767 990 IPR036640 GO:0005524|GO:0016020
Gabi3225g00016 1398 Coils Coil 38 58 - -
Gabi3225g00016 1398 SUPERFAMILY ABC transporter transmembrane region 62 377 IPR036640 GO:0005524|GO:0016020
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi3225g00016 Gabi-Chr3225 108931 118820 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00016 58 695 Calmodulin-binding Proteins AT2G36910 43.846 3.32e-164 526