Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi3225g00016 | ATGATGTCGAGGGGACTGTTCGGGTGGTCCCCACCTCACATACAGCCTCTCACGCCGGTTTCCGAGGTATCGGAGCCGCCTGAGTCGCCGTCGCCGTACCTGGACTTTGGCGCCGAGACCTCCGCGTCGCAGCAGGTTGAGGTCGAGGAGGAGATTGAGGAGCTCGAGGAGATTGAGCCGCCGCCCGCCGCGGCACCTTTCTCCCGCCTCTTTGCCTGCGCTGACTGCCTCGATTGGTTTCTCATGGTCGTCGGCTCCGTCGCCGCTGCCGCTCACGGCACCGCTCTCGTCGTTTACTTGCACTACTTTGCCAAAGTTATTCAGGTTCCTCAGCAAGGATCGCCGGAGGAGCAGTTTCACAGGTTCAAGGAGCTTGCTTTAACCATTGTTTATATTGCTGGGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTCTTACTGGAGAACGGCAGACCGCTGTCATCAGGTCAAAATATGTTCAAGTATTACTTAACCAAGAGATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTCATTCAGTCTGCTCTTAGTGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTAATAACATTAGCCACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTTCTCCATAGGCTTGCAGAGAATATTCAAGATGCATATGCTGAAGCAGCCAGTATTGCTGAACAGGCAGTTTCCTATATAAGGACCTTGTATGCATTTACAAATGAAACATTGGCTAAATATTCATATGCAACGTCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGCCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTGCAGCTCTGGGTTGGAAGGTTCTTGGTTATTCATGGGAAAGCTCATGGTGGTGAAATTATAACAGCTTTGTTTGCTGTGATTCTAAGTGGCTTGGGACTGAATCAAGCAGCGACAAATTTCTACTCATTTGATCAAGGGAGAATAGCTGCTTATAGACTTTTTGAGATGATAAGCCGGTCATCCTCATCTTTTAATCACGATGGCAGTGCTCTTGCTTCTGTGCAAGGAAATATTGAGTTTCGGAATGTTTATTTCAGCTATCTTTCTCGCCCTGAAATCCCTATCTTGAGTGGGTTTTATCTCACTGTTCCTGCCAAGAAAGCTGTGGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGGTTCTATGATCCAACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTTGAATGGCTGCGGAGTCAAATAGGACTTGTCACCCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGACACCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCGCATACCTTTATCAGCTCGTTAGATAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTTGCTTTGACAGAAGAGCAGAAAATAAAACTCTCTATTGCGAGAGCTGTACTTTTAAATCCATCAATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCCGTTCAGGAGGCTCTGGATCTTCTTATGTTGGGACGCTCAACCATAATAATTGCTCGAAGGCTTAGTCTTATAAGGAATGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAATTATTGACCCTGGATGGCTTATATGCAGAGCTCATTCGACATGAAGAGGCCACAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGCAGACTGCAGCTTTCCAAATTGAGAAAGATTCTTCAGAAAATCATAGTTTCAAAGAACCATCATCCCCTAGAATGATAAAATCACCCTCTCTTCAAAGAGTTTCTGCTGTATTTCGGCCTTCAGATGGCTTCTTTAACTCACAAGAATCACCAAAAGTTTTGAGCCCACCACCTGAGAAGATGATGGAAAATGGTCAGTCTTTGAATTCACCAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTACCGGAGTTACCCAAGATTGATGTTCAGTCTGTCCATCGACAAACATCAAAAGGTTCTGACCCAGAATCCCCTATTTCACCTCTTTTAACATCTGATCCTCAAAATGAACGCTCCCATTCACAAACTTTTAGTAGACCAGATAGTCATTCCGATGATTTTTCAGTGAAAATGGATGAAACAAAGGATGCACGTTATCAAGAACAACCCTCACTTTGGAGGCTGGCAGAGCTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCCTATATTATTGGCCTGGTGGTGACAGCTTATCATAGAATTGATGAAGCTCATCACTTACGAGGAGAGGTAGACAAGTGGTGCTTGATCATTGCCTGCATGGGTATCGTGACAGTTTTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGCTGGATGGTTTGATGAAGAGGACAACAGTGCTGACAATTTATCCATGCGCTTGGCCAATGATGCTACATTTGTGAGAGCGGCTTTTAGTAACCGACTTTCCATATTCATACAGGACAGTGCTGCAGTTAGTGTTGCTTTTCTCATTGGTGTTTTGCTGCACTGGCGAATAGCACTTGTGGCTTTAGCAACACTTCCAGTTCTCTGTGTTTCTGCCATTGCTCAGAAATTGTGGCTTGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACTGTAGTTGCATTCTGTGCCGGTAATAAAGTAATGGAACTTTACAGGCTGCAGTTAAATAAAATATTTAAGCAGAGCTTTCTTCATGGAGTTGCCATTGGTTTTGCGTTCGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCTCTTCTACTTTGGTACACTGCAACGTGTATTAAAAATAGTTATGTGGACCCACCTACTGCACTCAAGGAGTACATGGTTTTCTCATTCGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAGCGACGCAAATCTCTCATTTCAGTGTTTGAAATTATAGATCGCGTGCCTAAAATTGATCCTGATGATAGCTCAGCTTTGAGGCCACCCAATGTATATGGAAGCATTGAGTTGAAAAATGTTGATTTTTGTTATCCTTCTCGTCCAGAATTGTTGGTATTAAGCAATTTTAGTCTCAAAGTCAATGGGGGCCAAACAATTGCTGTTGTGGGAGTATCAGGGTCAGGAAAGAGCACTATAATATCTTTGATCGAGAGATTTTATGATCCAGTTGCTGGACAAGTTTTACTAGATGGGAGGGATTTAAAACTATATAATTTGAGATGGTTAAGAAGCCACCTTGGTCTGGTTCAGCAGGAACCTGTTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGGCATAATGCCAGTGAAGCTGAAATTAAAGAGGCTGCAAGAATAGCGAATGCTCATCATTTCATTAGTAACTTGCCTCATGGTTATGACACACACGTTGGGATGAGAGGTGTTGACTTAACTCCAGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTGTTGAAAAATGCTCCTATCTTGTTGTTGGATGAGGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACCACTATTCTAATAGCGCACAGGGCTGTGATGATGAGGCATGTGGACAACATAGTAGTTCTTAATGGAGGACGGATAGTGGAGGAGGGGACCCATGATTCATTGGTGGCGAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGGTTTGCGTCAGCATCGGCTTATTTAG | 4197 | 0.4284 | MMSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDFGAETSASQQVEVEEEIEELEEIEPPPAAAPFSRLFACADCLDWFLMVVGSVAAAAHGTALVVYLHYFAKVIQVPQQGSPEEQFHRFKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQEMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSALASVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELIRHEEATKLPKRMPVRNYKQTAAFQIEKDSSENHSFKEPSSPRMIKSPSLQRVSAVFRPSDGFFNSQESPKVLSPPPEKMMENGQSLNSPDKEPSIRRQDSFEMRLPELPKIDVQSVHRQTSKGSDPESPISPLLTSDPQNERSHSQTFSRPDSHSDDFSVKMDETKDARYQEQPSLWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYIIGLVVTAYHRIDEAHHLRGEVDKWCLIIACMGIVTVFANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEAGWFDEEDNSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVSVAFLIGVLLHWRIALVALATLPVLCVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLNKIFKQSFLHGVAIGFAFGFSQFLLFACNALLLWYTATCIKNSYVDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALRPPNVYGSIELKNVDFCYPSRPELLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPVIFSTTIRENIIYARHNASEAEIKEAARIANAHHFISNLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAVMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKGLRQHRLI | 1398 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi3225g00016 | 1398 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 821 | 1132 | - | - | |
Gabi3225g00016 | 1398 | FunFam | ABC transporter B family member 20 | 69 | 406 | - | - | |
Gabi3225g00016 | 1398 | PANTHER | ABC TRANSPORTER B FAMILY | 47 | 838 | IPR039421 | - | |
Gabi3225g00016 | 1398 | Pfam | ABC transporter | 423 | 567 | IPR003439 | GO:0005524 | |
Gabi3225g00016 | 1398 | Coils | Coil | 248 | 268 | - | - | |
Gabi3225g00016 | 1398 | FunFam | ABC transporter B family member 20 | 1139 | 1388 | - | - | |
Gabi3225g00016 | 1398 | Gene3D | - | 1147 | 1385 | IPR027417 | - | |
Gabi3225g00016 | 1398 | MobiDBLite | consensus disorder prediction | 727 | 741 | - | - | |
Gabi3225g00016 | 1398 | SUPERFAMILY | ABC transporter transmembrane region | 813 | 1134 | IPR036640 | GO:0005524|GO:0016020 | |
Gabi3225g00016 | 1398 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 83 | 369 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Gabi3225g00016 | 1398 | MobiDBLite | consensus disorder prediction | 749 | 781 | - | - | |
Gabi3225g00016 | 1398 | Pfam | ABC transporter | 1167 | 1315 | IPR003439 | GO:0005524 | |
Gabi3225g00016 | 1398 | Gene3D | ABC transporter type 1, transmembrane domain | 69 | 652 | IPR036640 | GO:0005524|GO:0016020 | |
Gabi3225g00016 | 1398 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1139 | 1385 | IPR027417 | - | |
Gabi3225g00016 | 1398 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 82 | 377 | - | - | |
Gabi3225g00016 | 1398 | FunFam | ABC transporter B family member 6 | 766 | 994 | - | - | |
Gabi3225g00016 | 1398 | Pfam | ABC transporter transmembrane region | 84 | 352 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Gabi3225g00016 | 1398 | Pfam | ABC transporter transmembrane region | 831 | 1093 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Gabi3225g00016 | 1398 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1149 | 1386 | IPR003439 | GO:0005524 | |
Gabi3225g00016 | 1398 | MobiDBLite | consensus disorder prediction | 658 | 794 | - | - | |
Gabi3225g00016 | 1398 | Gene3D | - | 392 | 639 | IPR027417 | - | |
Gabi3225g00016 | 1398 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 402 | 637 | IPR003439 | GO:0005524 | |
Gabi3225g00016 | 1398 | SMART | AAA_5 | 429 | 608 | IPR003593 | GO:0016887 | |
Gabi3225g00016 | 1398 | SMART | AAA_5 | 1176 | 1363 | IPR003593 | GO:0016887 | |
Gabi3225g00016 | 1398 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 826 | 1118 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Gabi3225g00016 | 1398 | FunFam | ABC transporter B family member 6 | 996 | 1146 | - | - | |
Gabi3225g00016 | 1398 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 392 | 636 | IPR027417 | - | |
Gabi3225g00016 | 1398 | FunFam | ABC transporter B family member 20 | 392 | 639 | - | - | |
Gabi3225g00016 | 1398 | Gene3D | ABC transporter type 1, transmembrane domain | 1003 | 1146 | IPR036640 | GO:0005524|GO:0016020 | |
Gabi3225g00016 | 1398 | Gene3D | ABC transporter type 1, transmembrane domain | 767 | 990 | IPR036640 | GO:0005524|GO:0016020 | |
Gabi3225g00016 | 1398 | Coils | Coil | 38 | 58 | - | - | |
Gabi3225g00016 | 1398 | SUPERFAMILY | ABC transporter transmembrane region | 62 | 377 | IPR036640 | GO:0005524|GO:0016020 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi3225g00016 | Gabi-Chr3225 | 108931 | 118820 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi3225g00016 | 58 | 695 | Calmodulin-binding Proteins | AT2G36910 | 43.846 | 3.32e-164 | 526 |