Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00012 ATGGTTCTATCGAACAAGAAGCTTAAACTGAAGCTTAGAGCTGACTTGACCCAAGACCAAACCAATTCCAACGTTGTTGATGTCCCTTCATCTTCTAACTCTCTCAAAAATCTTCTCGACTCTGCCACCCACAAACCCATATTGTCCAAGAGAGAGAAACGCCGAAAGATTCGATCTTTGCAAAACCCTCACCCTCCAGAAGCCGCTAATGAAGATGAAGGAAGGATTAAGGAAAGTGGGTCAGAGGGTTTGGGAAATAAGAAGAACAAAAAGAGAAAGAGGAAGGTAGAAGGTGATGATGTGGCAAATGGGGTTCTCAAGGATTCCAAGAAATCAAAGAGCAAGAACAAGAAGAAGCAGAAGCAGAAGAAGAAGAAGGCCAAAACGGTAGAGGAGAACAGTTCCAATCATGGAGGTGAAACGCCAGAGGCTACAGGGTTAACTAAGACCAATAACACTACCAGCCAGGGAAATGTTGATGTTCCCACAAAAGTTTACGTCGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAGGCTGTGGCACCATAACTGAAGTTGATTGCATGAGTTTTCCTGAAAGTGGGAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACTGAAGCAGCTGCCAAACGAGCATTAGCTTTTGATGGAGCTGACATGGGCGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGCCAGTAAAGCATCAGATTTTGCTCCAGAAGTTTTGGAGGGATACAATAGAATATATGTTGGAAATTTGTCATGGGATATTGCAGAGGAAGAACTAAGGAAATTCTTTTCAAATTGCAATATAACGTCCATACGATTTGGTATGGACAAGGAAACAGGAGAATTTCGAGGGTATGGTCATGTGGATTTCAGTGATAGTCAGTCACTGAAAACAGCTCTTACATTGGACCAAAATGTTTTGTCTGGTAGACCTGTCAAGATAAGTTGTGCGGTTCCTTTGAAGAAAAAACCAGGAAACAATAAAACTAATGGAGTTGATGGTGAGAAATCAAGTTCCACTGGAAGTGTCAAGATGAGTAGGAACAATACAAGCTCTGAGGCTCCAGTTAATGGAGTTGATGGTGAGAAATCAAGTTCCACTGTAAGTGGCAAGATGAGGAGGAGGACATGCTACGAGTGTGGTGAAAAAGGACATATGTTCTCGGCATGCCCAAAGAAACAAACAGTCACTTCAACCACAACCTAA 1251 0.4165 MVLSNKKLKLKLRADLTQDQTNSNVVDVPSSSNSLKNLLDSATHKPILSKREKRRKIRSLQNPHPPEAANEDEGRIKESGSEGLGNKKNKKRKRKVEGDDVANGVLKDSKKSKSKNKKKQKQKKKKAKTVEENSSNHGGETPEATGLTKTNNTTSQGNVDVPTKVYVGGIPYYSTEDDIRSYFEGCGTITEVDCMSFPESGKFRGIAIISFKTEAAAKRALAFDGADMGGLFLKIQPYKATRASKASDFAPEVLEGYNRIYVGNLSWDIAEEELRKFFSNCNITSIRFGMDKETGEFRGYGHVDFSDSQSLKTALTLDQNVLSGRPVKISCAVPLKKKPGNNKTNGVDGEKSSSTGSVKMSRNNTSSEAPVNGVDGEKSSSTVSGKMRRRTCYECGEKGHMFSACPKKQTVTSTTT 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00012 416 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 70 237 - -
Gabi3225g00012 416 Gene3D - 371 415 - -
Gabi3225g00012 416 MobiDBLite consensus disorder prediction 68 86 - -
Gabi3225g00012 416 Gene3D - 253 342 IPR012677 -
Gabi3225g00012 416 MobiDBLite consensus disorder prediction 345 387 - -
Gabi3225g00012 416 SUPERFAMILY RNA-binding domain, RBD 160 239 IPR035979 GO:0003676
Gabi3225g00012 416 MobiDBLite consensus disorder prediction 17 158 - -
Gabi3225g00012 416 MobiDBLite consensus disorder prediction 134 158 - -
Gabi3225g00012 416 MobiDBLite consensus disorder prediction 17 40 - -
Gabi3225g00012 416 CDD RRM1_PHIP1 165 236 IPR034361 -
Gabi3225g00012 416 SUPERFAMILY RNA-binding domain, RBD 252 340 IPR035979 GO:0003676
Gabi3225g00012 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 240 IPR000504 GO:0003723
Gabi3225g00012 416 SMART c2hcfinal6 391 407 IPR001878 GO:0003676|GO:0008270
Gabi3225g00012 416 MobiDBLite consensus disorder prediction 111 125 - -
Gabi3225g00012 416 ProSiteProfiles Zinc finger CCHC-type profile. 392 407 IPR001878 GO:0003676|GO:0008270
Gabi3225g00012 416 Gene3D - 104 248 IPR012677 -
Gabi3225g00012 416 SUPERFAMILY Retrovirus zinc finger-like domains 384 411 IPR036875 GO:0003676|GO:0008270
Gabi3225g00012 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 231 IPR000504 GO:0003723
Gabi3225g00012 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 327 IPR000504 GO:0003723
Gabi3225g00012 416 MobiDBLite consensus disorder prediction 93 110 - -
Gabi3225g00012 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 334 IPR000504 GO:0003723
Gabi3225g00012 416 SMART rrm1_1 259 330 IPR000504 GO:0003723
Gabi3225g00012 416 SMART rrm1_1 164 236 IPR000504 GO:0003723
Gabi3225g00012 416 MobiDBLite consensus disorder prediction 334 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3225g00012 Gabi-Chr3225 94008 96635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00012 163 371 Eukaryotic Initiation Factors Gene Family AT2G36660 28.194 7.32e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00012 - - gmx:100814693 529.635