Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00008 ATGAAAAGAGAAAGAGAAGTTGATAGCATAACCATGGCCAACTACTTGATGTTACTTTCTCGTGGAGGTGAATTTGAGACTAGCTACTTGAACTCTTCCAACAACCGTGTCTTTGAGTGCAAGACATGTAACAGGCAATTCCCATCGTTTCAAGCACTTGGTGGCCACCGTGCGAGCCACAAGAAGCCAAGGTTGATGGGAGAGGGTGATAATAGCCAAGTGCTTAATGGTTCACCTCCAAAGCCTAAAACTCACGAGTGCTCAATATGTGGGTTGGAGTTTGCTATAGGGCAAGCTTTGGGTGGACACATGAGGAGACACAGAGCAGCAGCTTCAAATGGAAACATGCAGAGTACTATTTCTATGAATATGAGTAGCACTAGTACTGGTAGCAGTGTTGATAATTCGGCAAACAGGAACAGGAAGAAGGATAACAGCAAAAGAGTTTTGTTTCTGGATTTGAATTTGACACCCTTAGAGAATGATGTGGAGTTTTTGAAGATTGGTCAAGCAACAACTCCATTGGTGGATTGTTTCAATTGA 543 0.4291 MKREREVDSITMANYLMLLSRGGEFETSYLNSSNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMGEGDNSQVLNGSPPKPKTHECSICGLEFAIGQALGGHMRRHRAAASNGNMQSTISMNMSSTSTGSSVDNSANRNRKKDNSKRVLFLDLNLTPLENDVEFLKIGQATTPLVDCFN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00008 180 PANTHER ZINC FINGER PROTEIN ZAT5 6 162 - -
Gabi3225g00008 180 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Gabi3225g00008 180 Pfam C2H2-type zinc finger 37 63 - -
Gabi3225g00008 180 Pfam C2H2-type zinc finger 85 109 - -
Gabi3225g00008 180 SMART c2h2final6 85 107 IPR013087 -
Gabi3225g00008 180 SMART c2h2final6 38 60 IPR013087 -
Gabi3225g00008 180 SUPERFAMILY beta-beta-alpha zinc fingers 36 107 IPR036236 -
Gabi3225g00008 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Gabi3225g00008 180 MobiDBLite consensus disorder prediction 54 80 - -
Gabi3225g00008 180 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Gabi3225g00008 180 Gene3D Classic Zinc Finger 35 107 - -
Gabi3225g00008 180 MobiDBLite consensus disorder prediction 118 136 - -
Gabi3225g00008 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Gabi3225g00008 180 MobiDBLite consensus disorder prediction 118 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3225g00008 Gabi-Chr3225 64975 65574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00008 1 177 C2H2 Transcription Factor Family AT2G37430 42.473 6.03e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3225g00008 zf-C2H2_6 9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00008 - - gmx:100816598 249.595