Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00004 ATGTCTTTTCAGAATAAAAACTTTTGGATGCCACGGGATGCTGGCTGCTTAGCTGAAGAAAATATGGGATATGAGAATTCTTCCAGAATTGAACCAAAGCGTGGTCATGGTGAACCAGAACTATTCAGCAACAACAAGAAGCAAGCTGTTGAAAGTGTTAGCGGCAGCCCAATTTCAGGAGTTTCACATATAAGTGTTTCTCCATGGGACACCAATTCGGGATTCCACTCAGTCACAGGTCAATTTTCTGACCGTCTCTTTGGATCTGAACTAAGTAACACATTTTCAATAGGTGTTGGCTACAGTAAGAATGATGGCAACATATCATTGGGCCCAACTTCTAACAATGGAAATGATAATACCATATCTACTAGGACGACATTAAGTAAGACTGATGACAATCTTGTTTCAATGGGTCACACCTTCAACAAGGGGGATGGGAGCTTTATGTTGATGGGCCACAATTATGGCAAGGGAGATGAAAATATCTTATCAATGAGTCAGGCCTTTGACAGGGGAGATGGAAATTTCATATCAATGGGTCAGTCATATGAAAAGGATGATAGCAATATGATATCTCTGGGTACCTCATACTACAAGGGGCATGAGAACTTTCTATCAATGGATCCAACCTATAGTAAATCAGGAGAAAATTTCATAACTATTGATGCTTCCTATGACAAGGGCATTGATCATATAATACCAATAGGTCCAACATATGATAAGGTGGATTCAAACATTGCATCAACAGTTCCTTCATATGACAAAAGAGATTCTAGCTCTTTAGCCGTGGACTACAACCACAATAAGGGTGAGGGAAGCACCATATCTTTTGGAGGTTTTCATGATGACCGGGAATCGAATCCCTCTGGAGGGATAATTAGTGGCTACGATCTATTGATGGGCAACCATACCTCAGCTGAAGGTTTGGATGGGGAGAAGGCTCTGACTCAGTCAAACTGTGAACTACCTGTAAATAGCAGTCCAAAATCTAATCTCAAAACTGATACTATCCTTAAGAATAAAGAGCCAAAGATAACCAAGAAGGCTCCTGTTAACAACTTCCCTTCAAATGTTAAAAGTTTGTTGTCAACTGGTATTTTTGATGGTGTTCCTGTGAGATATGTTTCTTGGTCACGAGAGAGAGTTCATAAAGGATTCATAAAGGGAACTGGGTATTTGTGTTCGTGTGATGACTGCAAGCAGTCCAAGGCTCTCAATGCATATGAGTTTGAGCGTCATGCTGGTGCCAAGACCAAACACCCTAACAATCACATATACTTTGACAATGGAAAAACCATCTATGCTGTCGTTCAAGAGCTGAAAAACACTCCTCAGGAGATGCTTTTTGATGCAATTCAAAAGGTGACTGGCTCTATCATCAATCAAAAGAATTTTCGTATCTGGAAAGCATCATACCAAGCTGCTTCTCGGGAGCTTCAGCGTATCTATGGGAAGGATGAAGTGATCATACCATCTTGA 1482 0.4062 MSFQNKNFWMPRDAGCLAEENMGYENSSRIEPKRGHGEPELFSNNKKQAVESVSGSPISGVSHISVSPWDTNSGFHSVTGQFSDRLFGSELSNTFSIGVGYSKNDGNISLGPTSNNGNDNTISTRTTLSKTDDNLVSMGHTFNKGDGSFMLMGHNYGKGDENILSMSQAFDRGDGNFISMGQSYEKDDSNMISLGTSYYKGHENFLSMDPTYSKSGENFITIDASYDKGIDHIIPIGPTYDKVDSNIASTVPSYDKRDSSSLAVDYNHNKGEGSTISFGGFHDDRESNPSGGIISGYDLLMGNHTSAEGLDGEKALTQSNCELPVNSSPKSNLKTDTILKNKEPKITKKAPVNNFPSNVKSLLSTGIFDGVPVRYVSWSRERVHKGFIKGTGYLCSCDDCKQSKALNAYEFERHAGAKTKHPNNHIYFDNGKTIYAVVQELKNTPQEMLFDAIQKVTGSIINQKNFRIWKASYQAASRELQRIYGKDEVIIPS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00004 493 Pfam Tify domain binding domain 386 441 IPR032308 -
Gabi3225g00004 493 PANTHER AUTOIMMUNE REGULATOR 8 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3225g00004 Gabi-Chr3225 55028 59874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00004 345 474 PHD Transcription Factor Family AT3G53680 53.846 1.56e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00004 - - gmx:100782217 638.262