Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00002 ATGGTGAATGTAATGGAATGGCAGAAACAGATGCAGAGGTGGCAGCATAATAGGAATGTTGATGCCAACGGAGATATGATGTATGTGAAGGTGATGACTGATGAGCAATTGGAAACTCTCAGAAAACAAATTGCTGTTTATGCCACCATTTGTGAGCAACTCATTGAGATGCACAGAACACTCTCAGCTCATCAGGATCTTGCAGGGGTTAGGCTGGGAAACATATACTGTGACCCATTGATGACATCTACTGGCAAAATAACATCCAGACAAAGGTGGACTCCTACACCAGTGCAGCTTCAGATTCTTGAGCGTATGTTTGATCAAGGGAATGGAACACCAAACAAGGAAAAAATCAAGGAGATAACTGCTGAACTGAGTCAGCATGGCCACATTTCTGAAACAAATGTCTATAATTGGTTCCAGAATAGGCGTGCTCGATCAAAAAGAAAACTGCAAAATGTGACACCTGGTAACACTGAATCAGAAGTAGAGAATGAGGTTGATTCTAAGGATAAGAAGACAATACCAGAGGAATATCAGTCCCAACATAATGTAACTACTGGGGCTGAAAAGTTGTGCTTTCAGAACCCTGAAGTTTGCTCTGACTTGCAGTACTTGAATCCAGATTCTAACAAACCATATTCCATGTTCTCGTCAGATGGCAGTCTAAGATCCTCAAGAGATTTGAGTCCAGTGCCTGTTTTCGATGAGGTGCTATCAAACACAAGAAGTGACTATCTAGCTGGAAAAATGGAAGTACCTGGGAGTTACAATTTATACCAGCAAGCTGGAGACTACAATTTGGAGGGTTGA 816 0.4179 MVNVMEWQKQMQRWQHNRNVDANGDMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHRTLSAHQDLAGVRLGNIYCDPLMTSTGKITSRQRWTPTPVQLQILERMFDQGNGTPNKEKIKEITAELSQHGHISETNVYNWFQNRRARSKRKLQNVTPGNTESEVENEVDSKDKKTIPEEYQSQHNVTTGAEKLCFQNPEVCSDLQYLNPDSNKPYSMFSSDGSLRSSRDLSPVPVFDEVLSNTRSDYLAGKMEVPGSYNLYQQAGDYNLEG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00002 271 Gene3D - 92 156 - -
Gabi3225g00002 271 SUPERFAMILY Homeodomain-like 89 152 IPR009057 -
Gabi3225g00002 271 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 268 IPR044559 GO:0003700
Gabi3225g00002 271 SMART HOX_1 88 155 IPR001356 GO:0003677
Gabi3225g00002 271 ProSiteProfiles 'Homeobox' domain profile. 86 151 IPR001356 GO:0003677
Gabi3225g00002 271 MobiDBLite consensus disorder prediction 149 174 - -
Gabi3225g00002 271 CDD homeodomain 90 151 IPR001356 GO:0003677
Gabi3225g00002 271 Pfam Homeodomain 90 150 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3225g00002 Gabi-Chr3225 10750 13725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00002 4 271 Wox Gene Family AT4G35550 49.664 1.93e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi3225g00002 Homeodomain 6.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00002 - - gmx:100817342 415.616