Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3225g00001 GTTCATTTTTCAGACATTGCTGAATTTTCTATCTCTTCCTCAAGGACAGACATGCAGCAGAGACAGATAACGAATCTGATGGAATGGCAGAAACAGGTTCAGAATGAGAATGTTGTTGCCAACAATGGGAAGGTTATCATGACTGATGAGCAGTTGGAAACTCTGAGGAAACAAATCGCAGCTTATGCCAACATTTCAGAGCAACTACTTCAGAAGCACAAAACACTCTCAGTTCAGCGCAATCTTCCAGTTCCCAAGCAGAAACGTAGTGGTGTAGTGGGAGATATAAGCAGTGACCCATTGACCCACAAGAGGTGGACTCCAACGCTCAAGCAGCTTCAGATTCTTGGGCGAATATTTGAGGAGGGGAAGGGGAAGGGAACTACAAACAAGGAAAAAATCAAGGAGATAACCGCTGAACTGAGCCAGTATGGCCAAATATCCGAAAGAAATGTTTATAATTGGTTTCAGAACAAGCGAGCTCGACGGAAAAGAAAACGGCATAATGTGACAGAGGGTAAGGGTAACACTGAATCAGAAATAAACAATGAGGAATATCAGTCCCAACCAATGGGCTAA 579 0.4335 VHFSDIAEFSISSSRTDMQQRQITNLMEWQKQVQNENVVANNGKVIMTDEQLETLRKQIAAYANISEQLLQKHKTLSVQRNLPVPKQKRSGVVGDISSDPLTHKRWTPTLKQLQILGRIFEEGKGKGTTNKEKIKEITAELSQYGQISERNVYNWFQNKRARRKRKRHNVTEGKGNTESEINNEEYQSQPMG 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3225g00001 192 MobiDBLite consensus disorder prediction 159 192 - -
Gabi3225g00001 192 MobiDBLite consensus disorder prediction 175 192 - -
Gabi3225g00001 192 PANTHER WUSCHEL-RELATED HOMEOBOX 13 28 185 IPR044559 GO:0003700
Gabi3225g00001 192 SUPERFAMILY Homeodomain-like 101 167 IPR009057 -
Gabi3225g00001 192 CDD homeodomain 104 158 IPR001356 GO:0003677
Gabi3225g00001 192 Gene3D - 105 171 - -
Gabi3225g00001 192 SMART HOX_1 101 170 IPR001356 GO:0003677
Gabi3225g00001 192 Pfam Homeodomain 104 165 IPR001356 GO:0003677
Gabi3225g00001 192 ProSiteProfiles 'Homeobox' domain profile. 99 166 IPR001356 GO:0003677
Gabi3225g00001 192 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3225g00001 Gabi-Chr3225 1203 2453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3225g00001 26 168 Wox Gene Family AT4G35550 49.405 1.01e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi3225g00001 Homeodomain 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3225g00001 - - gmx:100815539 140.584