Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3223g00003 ATGGAGCAGCAACATCAAGCACTTTCAAATGTCAAGCCCACAGTTACAGCTGCAGATTTCTTCAGATTCGAAGTTACTGTTACACTGCGACACATCTCAAGTACTCGTGTTATAAACATATCAACCTTACTCCAAACCACTGAACACGTAAGGTGCAAACACTTCTTCGAAAGTACTGCTCAAGATCTCCAACAAACTGCATTAGATTTCCTACGAGCATTGCTTTTACCCTACCCATGGTCCTTGCAGTACTTTACCCACGATTGCCTTGATGAATTCTCAGGGAGCATCATACATCAGGTTCAACAGCGTTTTGATTTTATAAAACCACATGCCGGTTCAGAAGACCAAGGGCAAGTGTTCCCTTTGTCTCTGGAAATCGTCTTGGATGTGCCGTCAGTTGAAGAGATTCAAGAGTCGGAGAGTGCAATTATGGAAGAAGAGTCTATGCAAAGCGTTAGAATGGTTCCGGCATCCAAGAATGCCATCAATTCTCTAAAGAAATTCAAGGTTATGAAACACAATGAGCATTGCACTATCTGCTTGGAAGAGTTCGATGTGAGTGGTGATAATGATGATGACGTGGCAGCCTCCGCAATGCCCTGCGACCACGTGTTTCACCAACAATGTATTGTGCAATGGCTGCAAACTAGTCATGTGTGCCCTTTGTGTCGCTGCCCTATGCCCACCGCCAACGAGTAG 702 0.4473 MEQQHQALSNVKPTVTAADFFRFEVTVTLRHISSTRVINISTLLQTTEHVRCKHFFESTAQDLQQTALDFLRALLLPYPWSLQYFTHDCLDEFSGSIIHQVQQRFDFIKPHAGSEDQGQVFPLSLEIVLDVPSVEEIQESESAIMEEESMQSVRMVPASKNAINSLKKFKVMKHNEHCTICLEEFDVSGDNDDDVAASAMPCDHVFHQQCIVQWLQTSHVCPLCRCPMPTANE 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3223g00003 233 SMART ringv_2 177 225 IPR011016 GO:0008270
Gabi3223g00003 233 Pfam Ring finger domain 177 225 IPR001841 -
Gabi3223g00003 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 231 IPR013083 -
Gabi3223g00003 233 SMART ring_2 178 224 IPR001841 -
Gabi3223g00003 233 ProSiteProfiles Zinc finger RING-type profile. 178 225 IPR001841 -
Gabi3223g00003 233 SUPERFAMILY RING/U-box 170 230 - -
Gabi3223g00003 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 111 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3223g00003 Gabi-Chr3223 43067 43768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3223g00003 135 229 C3H Transcription Factor Family AT1G18760 38.776 1.53e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3223g00003 - - gmx:102665306 146.747