Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3223g00002 ATGGCATTCACAGAACCAAGGTTAGCTAGCTTTCAGGTGAGTACGAGCGAGCAGCAACATCAAGCACTTCCAAACGTCAAGCCCACAGCTACAATTACAGATGTCTTCAGATTTGAAGTCACTGTTACACTGCGACACATCTCAAGTACTCGTGTTATAAACATATCAACCCTAGTACTCCAAACCACTGTACACATGAGGTGCAAACGCTTCTTCCTAAGTAATGATCAAGATCTCCAACGAACTGCATTAGATTTCCTACGAGCATTGCTTTTACCCTACCCAATGTCCTTGCAGTACTTTACCCGGGATTGCCTTGATGAAATCTCAGGTAGGATCATACATCAGGTTCAACAGCTTTTTGATTTTATAAAACCACATGCGGCCGGTTCACAAGACCAAGGGCAAGTGTTCCCTTTGTCTCTGGAAATCGTCTTGGATGTGCCGTCAGTTGAAGAGAATCAAGAGATGGAGCTGACAGATGAAGAGATTCAAGAGTTGGAGAGTGCAATTATGGAAGAAGAGTCTATGCAAAGTGTTAGAATGGTTTCGGCATCTAACGAAGCCATCCAATCTCTGAAAACATATGTGCTTCCTGAGAATTGCAGTGTATGCATGGAAACGTTTGGTGCTGAAGGGGAAGATGTGAAGATTTCGCCAATGCCATGCGGTCATGTGTTTCACCATCATTGTATTGTGCAGTGGCTTCAAACCAGTTATATGTGTCCCTTGTGTCGCTACCCTATGCCTACTTCTAACAACTAA 765 0.4366 MAFTEPRLASFQVSTSEQQHQALPNVKPTATITDVFRFEVTVTLRHISSTRVINISTLVLQTTVHMRCKRFFLSNDQDLQRTALDFLRALLLPYPMSLQYFTRDCLDEISGRIIHQVQQLFDFIKPHAAGSQDQGQVFPLSLEIVLDVPSVEENQEMELTDEEIQELESAIMEEESMQSVRMVSASNEAIQSLKTYVLPENCSVCMETFGAEGEDVKISPMPCGHVFHHHCIVQWLQTSYMCPLCRYPMPTSNN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3223g00002 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 252 IPR013083 -
Gabi3223g00002 254 Coils Coil 150 177 - -
Gabi3223g00002 254 ProSiteProfiles Zinc finger RING-type profile. 202 246 IPR001841 -
Gabi3223g00002 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 150 250 - -
Gabi3223g00002 254 SMART ringv_2 201 246 IPR011016 GO:0008270
Gabi3223g00002 254 Pfam Ring finger domain 201 246 IPR001841 -
Gabi3223g00002 254 SUPERFAMILY RING/U-box 201 251 - -
Gabi3223g00002 254 CDD RING-H2_PA-TM-RING 202 246 - -
Gabi3223g00002 254 SMART ring_2 202 245 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3223g00002 Gabi-Chr3223 31871 32635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3223g00002 162 250 C3H Transcription Factor Family AT1G18760 33.684 1.22e-12 63.5