Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3223g00001 ATGGATTCTGCGTTCTCCGTCACCACGACGGCGCAGATGGTGCTTTTCAGAGCACTCCACCGTCATTTGACCGGAGCTCCTCAACGCGCGCTCCTCCGCCGCAACCTCAAATGCATTGTTGCTTCCTACAACAACTGCTGCCGCATTCCGTGCTCTTCTGCCTCTTTCGCTTCTGCGCCGTCGTCGCCGTCGCTCGCCAAATTCCGTGCGCTGCTCAAGCGAACACCATGCCCTCTGCGCTGCGTTTCGACCTCCGCTGCTTCGTTTGCTTCTTCCGCCGGCAGTGGTAATGGCGGCGCTGGAGCCGGAGACGGTGGAGGCGGAGGCGGAAGTTCTGGCGGTGAGTCTGGAGATGGTAATCTCAAATTGGTTGTTGACGCGGCTCAGGAGTTTTCTGCACTTTCTCCTGATCTTATCATTCTCGATGTGTCGGGAATGGTGTGCGGAGGATGTGCAGCGACTGTGAAAAGGATCCTGGAAAGTCGACCACAAGTGTCATCTGCTAGTGTAAATTTAACAACAGAGACAGCAATAGTTTGGCCTGTATCTGAAGCTAAAACTGCACCAAATTGGCAAAAGCAATTAGGGGAGGCACTTGCAGAGCATTTAACTAGCTGTGGTTATAATTCTAGCCTTCGAGATTCAGCAAGAGACAGTTTTCTCCAAATATTTGAAAGAAAGACGGAGGAAAGGCATAGACAATTAAGAGAAAGTGGTCGCGAGCTAGTTGTTTCTTGGGCTCTTTGTGCTGTCTGTCTGGTTGGCCATCTCTCTCATTTCTTTGCAGCGAAGGCACCATGGATCCATGCATTTCATTCCATTGGGTTTCATCTATCATTGTCTTTGTTTACATTGCTTGGTCCTGGACGTCAACTTGTCCTTGATGGCTTAAAAAGCCTTCTTAAAAGGGCGCCAAACATGAACACCTTAGTTGGTCTTGGAGCTTTATCATCATTTACAGTCAGTTTATTTGCTGTCTTGCTGCCAAATTTGGGTTGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATTGCATTTGTCTTGTTAGGAAGAAATCTTGAACAGAGGGCTAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGCTTATTGCCATCAAAAGCTCGCCTTGTAGTTAACAATGGGGAAACAGAGATTGGCTCAGTTGTTGAAGTTCCTTCTGACAGTCTTTCTATTGGAGACCAAATTATTGTATTACCTGGAGACCGTATTCCAGCTGATGGAATTGTGAGAGCTGGTAGAAGCACTGTAGATGACTCAAGTTTCACTGGGGAGCCACTGCCAGTAACAAAAGTACCTGGGAGTGAGGTTGCAGCTGGAACTATAAATCTTAATGGAACTCTTACGATTGAAGTGCAGAGACCAGGTGGTGAGACTTCTATGGCAGACATTGTTCGTCTAGTTGAAGAGGCCCAAAGTAGGGAAGCTCCTGTACAGCGGTTGGCTGACAAGGTGGCTGGACACTTCACTTATGGAGTGATGGCGGTCTCTGCTACCACATTTATATTCTGGAGTCTGTTAGGCACACACATTTTACCTGCTGCTGTATATCAAGGAAGTGCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGTGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTTTGGGGGCTAAAAGAGGATTACTCTTGCGGGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAAACACAGTTGTGTTCGATAAAACAGGGACCCTTACAGTTGGTAGACCTGTGGTGACAAAGATTGTCACTCCTACATGCATAGAAAATGCAAATCCAAG 1847 0.4732 MDSAFSVTTTAQMVLFRALHRHLTGAPQRALLRRNLKCIVASYNNCCRIPCSSASFASAPSSPSLAKFRALLKRTPCPLRCVSTSAASFASSAGSGNGGAGAGDGGGGGGSSGGESGDGNLKLVVDAAQEFSALSPDLIILDVSGMVCGGCAATVKRILESRPQVSSASVNLTTETAIVWPVSEAKTAPNWQKQLGEALAEHLTSCGYNSSLRDSARDSFLQIFERKTEERHRQLRESGRELVVSWALCAVCLVGHLSHFFAAKAPWIHAFHSIGFHLSLSLFTLLGPGRQLVLDGLKSLLKRAPNMNTLVGLGALSSFTVSLFAVLLPNLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSLLPSKARLVVNNGETEIGSVVEVPSDSLSIGDQIIVLPGDRIPADGIVRAGRSTVDDSSFTGEPLPVTKVPGSEVAAGTINLNGTLTIEVQRPGGETSMADIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAVSATTFIFWSLLGTHILPAAVYQGSAVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTVGRPVVTKIVTPTCIENANP 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3223g00001 615 ProSitePatterns E1-E2 ATPases phosphorylation site. 589 595 IPR018303 -
Gabi3223g00001 615 Pfam E1-E2 ATPase 371 567 - -
Gabi3223g00001 615 PANTHER ATP7, ISOFORM B 135 603 - -
Gabi3223g00001 615 SUPERFAMILY Calcium ATPase, transduction domain A 388 476 IPR008250 -
Gabi3223g00001 615 ProSiteProfiles Heavy-metal-associated domain profile. 137 211 IPR006121 GO:0046872
Gabi3223g00001 615 Gene3D - 598 607 IPR023299 GO:0000166
Gabi3223g00001 615 ProSitePatterns Heavy-metal-associated domain. 143 172 IPR017969 GO:0046872
Gabi3223g00001 615 SUPERFAMILY Calcium ATPase, transmembrane domain M 338 581 IPR023298 -
Gabi3223g00001 615 Gene3D - 139 215 - -
Gabi3223g00001 615 NCBIfam HAD-IC family P-type ATPase 343 607 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3223g00001 615 Gene3D - 578 597 IPR023214 -
Gabi3223g00001 615 Pfam Heavy-metal-associated domain 141 208 IPR006121 GO:0046872
Gabi3223g00001 615 Gene3D - 357 480 - -
Gabi3223g00001 615 SUPERFAMILY HMA, heavy metal-associated domain 139 210 IPR036163 GO:0046872
Gabi3223g00001 615 FunFam Copper-transporting ATPase PAA1, chloroplastic 137 212 - -
Gabi3223g00001 615 CDD HMA 141 208 IPR006121 GO:0046872
Gabi3223g00001 615 FunFam Copper-transporting ATPase 1, putative 358 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3223g00001 Gabi-Chr3223 5063 19703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3223g00001 289 603 Primary Pumps ATPases AT1G63440 42.547 2.71e-69 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3223g00001 K17686 - gmx:100777857 985.326